Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09630 654 / 0 Ribosomal protein L4/L1 family (.1.2) AT5G02870 647 / 0 Ribosomal protein L4/L1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019903 [exp] 790 / 0 AT3G09630 674 / 0.0 Ribosomal protein L4/L1 family (.1.2) Lus10014014 [exp] 591 / 0 AT3G09630 510 / 0.0 Ribosomal protein L4/L1 family (.1.2) Lus10019904 [exp] 563 / 0 AT3G09630 488 / 3e-173 Ribosomal protein L4/L1 family (.1.2) Lus10014431 [exp] 235 / 2e-77 AT3G09630 175 / 1e-54 Ribosomal protein L4/L1 family (.1.2) Lus10014430 [exp] 138 / 3e-40 AT5G02870 103 / 7e-28 Ribosomal protein L4/L1 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G132450 [exp] 688 / 0 AT3G09630 617 / 0.0 Ribosomal protein L4/L1 family (.1.2) Potri.006G132551 [exp] 685 / 0 AT3G09630 612 / 0.0 Ribosomal protein L4/L1 family (.1.2) Potri.016G084400 [exp] 667 / 0 AT3G09630 585 / 0.0 Ribosomal protein L4/L1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00573 [flax] [poplar] Ribosomal_L4 Ribosomal protein L4/L1 family
Representative CDS sequence Show only first row Show all	>Lus10026476 pacid=23164366 polypeptide=Lus10026476 locus=Lus10026476.g ID=Lus10026476.BGIv1.0 annot-version=v1.0 ATGGCTGCAACCGCCGCTGCACGTCCCCTTGTCTCCATCCAAACCCTTCCCGTCCTCAATGATATGTCCACTGATTCCCCTACCACCGTACACCTCCCCG ACGTGATGCGCTCCTCCATCCGTCCCGACATAGTCAACTTCGTCCACGCCCAGATGTCGAACAACAGTCGCCAACCCTACGCCGTCTCCAAGAAGGCCGG TCACCAGACCTCCGCCGAGTCATGGGGTACCGGCCGTGCCGTTTCGCGTATCCCTCGTGTCTCCGGAGGAGGCACGCACAGAGCTGGCCAGGGAGCCTTC GGGAACATGTGCCGTGGTGGACGCATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCACAGGAGGATCAACGTCAACCAGAAGCGGTTCGCAGTTGTTT CCGCGATCGCCGCGTCGGCCGTGCCTTCTCTGGTGATGGCTCGCGGCCACCGGATTGACACTGTTCCCGAATTGCCCCTGGTGATCAACGATTCCGCGGA GGGTGTCGAGAAGACTTCCACCGCCATCAAGGTGTTGAAGGAGATCGGAGCTTATGCCGACGCCGAGAAGGCCAAGGACAGCCAGGCGATCCGCGCCGGG AAAGGTAAGGCTAGGAACCGTAGATACGTATCTCGTAAGGGACCATTGGTTGTTTACGGTAATGAAGGTGCTAAGCTGGTTAAGGCCTTCCGTAACATTC CTGGTGTTGAGATCGCCAATGTGGAACGCCTCAACCTTTTGAAGCTGGCTCCTGGTGGTCATTTGGGACGGTTTGTGATCTGGACCAAGTCCGCTTTTGA GAAGCTTGACTCGATCTATGGATCGTTTGAGAAGGCTTCGGAGAAGAAGAATGGTTATGTCTTGCCCAGGGCCAAGATGGTGAATGCTGACCTTGCCAGG ATCATCAACTCCGATGAGGTTCAGTCTGTGGTGAAGCCCGTCAACAAAGAAGTGAAGAGGGCGACGCTGAAGAAGAATCCATTGAAGAACTTGAACGTGA TGCTTAAGCTTAACCCGTATGCTAAGACTGCTAGGAGAATGTCATTGTTGGCTGACGCCCAGCGCGTTAAATCTAAGAAGGAGAAGCTTGACAGGAAGAG GACTCCCATTAGCAAGGAGGAAGCAAGTGCAATCAAGGCCGCTGGGAAGGCATGGTACAAGACAATGGAATCAGAGAGCGATTACTCAGAGTTTGAGATC TTCTCCAAATGGCTGGGTGCATCTCAGTAG
AA sequence Show only first row Show all	>Lus10026476 pacid=23164366 polypeptide=Lus10026476 locus=Lus10026476.g ID=Lus10026476.BGIv1.0 annot-version=v1.0 MAATAAARPLVSIQTLPVLNDMSTDSPTTVHLPDVMRSSIRPDIVNFVHAQMSNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVSGGGTHRAGQGAF GNMCRGGRMFAPTKIWRRWHRRINVNQKRFAVVSAIAASAVPSLVMARGHRIDTVPELPLVINDSAEGVEKTSTAIKVLKEIGAYADAEKAKDSQAIRAG KGKARNRRYVSRKGPLVVYGNEGAKLVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKASEKKNGYVLPRAKMVNADLAR IINSDEVQSVVKPVNKEVKRATLKKNPLKNLNVMLKLNPYAKTARRMSLLADAQRVKSKKEKLDRKRTPISKEEASAIKAAGKAWYKTMESESDYSEFEI FSKWLGASQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	0	1
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	1.0	0.9802
AT5G60960		PNM1	PPR protein localized to the n...		Lus10034673 [exp]	2.6	0.9724
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10035414 [exp]	3.0	0.9763
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	3.2	0.9788
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10013183 [exp]	3.5	0.9757
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10020055 [exp]	3.5	0.9724
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	4.7	0.9688
AT5G48760			Ribosomal protein L13 family p...		Lus10032599 [exp]	5.5	0.9738
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10026151 [exp]	6.6	0.9453
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10031021 [exp]	6.7	0.9717

Compare expression of checked genes

Lus10026476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.