Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53320 79 / 4e-15 unknown protein AT2G37070 68 / 1e-11 unknown protein AT5G60150 56 / 7e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019909 [exp] 637 / 0 AT3G53320 93 / 1e-19 unknown protein Lus10023170 [exp] 347 / 3e-109 AT3G53320 133 / 1e-32 unknown protein Lus10023488 [exp] 58 / 2e-08 AT2G38890 100 / 3e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085600 [exp] 139 / 7e-34 AT3G53320 174 / 4e-46 unknown protein Potri.006G131650 [exp] 137 / 3e-33 AT3G53320 146 / 1e-36 unknown protein Potri.008G044500 [exp] 75 / 9e-14 AT2G38890 107 / 1e-25 unknown protein Potri.010G217000 [exp] 63 / 4e-10 AT2G38890 92 / 2e-20 unknown protein Potri.005G131500 [exp] 51 / 3e-06 AT5G60150 106 / 9e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026478 pacid=23164407 polypeptide=Lus10026478 locus=Lus10026478.g ID=Lus10026478.BGIv1.0 annot-version=v1.0 ATGAGCGAGTTCCGAGAGAATTCCGGTCTGGCAGATAACCCTCTGGGACTCATCGACGTCTCCTTCGAGGACGATTGCCTCTATTCCACTTCTTCCCCGC CTCGCGACTTCCACTTTTCAGGTCGCTTTCCTTACCACTTTTTGTCATTTCCCTTCCTCTTCTTCTCCATCGCGATCGCTTCTGCTCTGCGGTTACCTCT TTCTTATTCCGCTATCTATTTCAGCATGTTAATGATCGGATCTTCATCTTGCAACACCGCAACTTGGCTGATTAGGAATGATTTATTGGACGCTGGAGAT CCACTGTCCTTAAACATTACAGATTCGCCGAGTCGTCAGACGTCAGTTGGCGGAGATGATGTCCGGGAACCAGGTGAGAGGAAACAAAATCTGAAGTGCA ATCTGCGCAAAAGCTTAGCCTGGGATAGCGCGTTCCTCAACGGCGCAGCAGGTGTACTAGACCCAGCTGAGTTGTCTAGTATCGCTGGACACAGTGAGAA AAGAGGGATGTTACCTGGAATCAGAGAGGAGTTGGAAAGATCAATGGACTCATTATCTACCTTAGCAAGTGATGGGTTGACTATGGATAATCTTGAAGGT GACCTGTTTGGTGACATTAGAGCATCAATCCAGAAATCAAACAGATCATCCTCTGCTGTTGCCAAATCCATGGCGAAGTCTCCCAGAATGGGATCTGGCA TGGCTGCCAGCCGAATGAAACAATCTCCAAGAACAGTAGAGGAAGCTTCTCTAAACAAGCCAAAAGCTAATGCTGCACTGAAGAAGCCAGCTACTGTCAT ACCAGGATCACGAAGAACGTTGAAGAAGGCATCTCCTAGTGCACACGATCCCCAGGCAAGTGCCTTTTACTTGATAATTGGGGAATCCCTTGCCGTAATA AAGGAATCAGCATCCCTGTCTAAGCCCACTAAGATAGCTTGCAGAGGTAGCATATCAACAGCAGCTAAAGAACCTTTATTGAACCACAACCGTGTTACAC TAGAAGACGATAAAGGAAAAAGTTCGGCTTCAGCAAATTCAAAAGAACTGCGAGGAATACTAAAACCCCCAACTTCTAGTGGTCCGAGAAATACTGTGTC CAGGCTACGTCCACTTTCAGTAGCCTCGTCTTCATCCAGTCGTTCCGAAAGCATTTCATCAGACGGTAGCATCAAATCTTTGAAATCTGTTAGAAGAAAT GTGGCCCCGAGGACTGGTGTTCCATCTGGTGGCCTAATAGCTAAAGCCGCATCAAGAATCACTACGAAAAGTAAGAATCTCTCAACTATTCCGCAACCTT TGCACTATCTCAAGTCTGCAGCCAAGCTCTCCCCAAGCATTTCACCAGCAAGCTCAGTTAGTGAATGGTCGATAGATTCAGTGTCATTTTCACCAACTTC ACCTCTCAATAAGAGATCTAATTATTCAAGATCCAGCATTGGCTCAAGCTCCTGCGGAGAGTACTCTTATCAAGATGAATGCAGCTCCCAGGTTTCGGAC TGTCAAAGCCATACTAGTGAATACAGTGAAGCCAGCATCCAAAGTCTGTCATCAATTGGAAGGGTCTCCAATAAAAACAGAGGACTTAACACAGATATGG CTAAGCCCTCTGGCCTCCGAATCCCATCACCAAAAATCGGTTTCTTTGACGGAGGGAGATCATCATCAGCCTTAAAGTCGAATGGAAATGTTCAACCGCT ACCAGGAGCACGAAGCGGAATACCTAGACCGGGGACAGTTGTTCAGGGAACGCTAGGAAAGGTTCAAAATGCTAAAACTACCACTCCGGTGAAAAGTCCG AAGATTAGCACTCCGAAACAACCCTTGAGCTCCAAGTCGAAATCTCCATTGTCTCATGAGGATTCTTCCAGTGCAGCTGTTGTACCAAAGGTTGGTAGCA TTCCAAGAAACGCAAAGCGCTCTCCGGGCATATCTCCAAGGGTGCAAAGCAAGATACCATCCACTGGTGACAAGAATTCGAAGCCTATGAAGGTGAGGCC TATTGATGAAAGACATGCTCCTAACGGGAAGGCCCAGAACCCATGTTCTAGCTGA
AA sequence Show only first row Show all	>Lus10026478 pacid=23164407 polypeptide=Lus10026478 locus=Lus10026478.g ID=Lus10026478.BGIv1.0 annot-version=v1.0 MSEFRENSGLADNPLGLIDVSFEDDCLYSTSSPPRDFHFSGRFPYHFLSFPFLFFSIAIASALRLPLSYSAIYFSMLMIGSSSCNTATWLIRNDLLDAGD PLSLNITDSPSRQTSVGGDDVREPGERKQNLKCNLRKSLAWDSAFLNGAAGVLDPAELSSIAGHSEKRGMLPGIREELERSMDSLSTLASDGLTMDNLEG DLFGDIRASIQKSNRSSSAVAKSMAKSPRMGSGMAASRMKQSPRTVEEASLNKPKANAALKKPATVIPGSRRTLKKASPSAHDPQASAFYLIIGESLAVI KESASLSKPTKIACRGSISTAAKEPLLNHNRVTLEDDKGKSSASANSKELRGILKPPTSSGPRNTVSRLRPLSVASSSSSRSESISSDGSIKSLKSVRRN VAPRTGVPSGGLIAKAASRITTKSKNLSTIPQPLHYLKSAAKLSPSISPASSVSEWSIDSVSFSPTSPLNKRSNYSRSSIGSSSCGEYSYQDECSSQVSD CQSHTSEYSEASIQSLSSIGRVSNKNRGLNTDMAKPSGLRIPSPKIGFFDGGRSSSALKSNGNVQPLPGARSGIPRPGTVVQGTLGKVQNAKTTTPVKSP KISTPKQPLSSKSKSPLSHEDSSSAAVVPKVGSIPRNAKRSPGISPRVQSKIPSTGDKNSKPMKVRPIDERHAPNGKAQNPCSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53320			unknown protein		Lus10026478 [exp]	0	1
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10040505 [exp]	3.2	0.8231
AT5G60370			unknown protein		Lus10038466 [exp]	5.0	0.8029
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	10.2	0.8260
AT3G30300			O-fucosyltransferase family pr...		Lus10034356 [exp]	13.0	0.8202
AT1G28610			GDSL-like Lipase/Acylhydrolase...		Lus10010208 [exp]	15.9	0.7599
AT4G19010			AMP-dependent synthetase and l...		Lus10016630 [exp]	16.6	0.8124
AT2G26970			Polynucleotidyl transferase, r...		Lus10037420 [exp]	31.3	0.7847
AT4G39160	MYB		Homeodomain-like superfamily p...		Lus10040429 [exp]	32.2	0.7795
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10038906 [exp]	37.5	0.7233
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	39.7	0.7197

Compare expression of checked genes

Lus10026478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.