Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02960 268 / 3e-94 Ribosomal protein S12/S23 family protein (.1) AT3G09680 265 / 5e-93 Ribosomal protein S12/S23 family protein (.1) ATCG00905 49 / 1e-08 ATCG00905.1, RPS12C ribosomal protein S12C (.1) ATCG01230 49 / 1e-08 ATCG01230.1, RPS12B ribosomal protein S12B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023172 [exp] 286 / 3e-101 AT5G02960 268 / 3e-94 Ribosomal protein S12/S23 family protein (.1) Lus10019910 [exp] 286 / 3e-101 AT5G02960 268 / 3e-94 Ribosomal protein S12/S23 family protein (.1) Lus10015063 [exp] 243 / 2e-79 AT5G14180 224 / 1e-71 Myzus persicae-induced lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085800 [exp] 281 / 2e-99 AT5G02960 271 / 3e-95 Ribosomal protein S12/S23 family protein (.1) Potri.008G044400 [exp] 281 / 2e-99 AT5G02960 271 / 3e-95 Ribosomal protein S12/S23 family protein (.1) Potri.010G217100 [exp] 281 / 2e-99 AT5G02960 271 / 3e-95 Ribosomal protein S12/S23 family protein (.1) Potri.006G131500 [exp] 281 / 2e-99 AT5G02960 271 / 3e-95 Ribosomal protein S12/S23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00164 [flax] [poplar] Ribosom_S12_S23 Ribosomal protein S12/S23
Representative CDS sequence Show only first row Show all	>Lus10026479 pacid=23164347 polypeptide=Lus10026479 locus=Lus10026479.g ID=Lus10026479.BGIv1.0 annot-version=v1.0 ATGGGTAAGACACGTGGTATGGGAGCAGCTCGCAAGCTGAAGGACCACCGCAGGAGGCAAAGGTGGGCTGACAAGGCTTACAAGAAGTCTAACTTGGGTA ACGAGTGGAAGAAGCCCTTCGCCGGTTCTTCCCATGCCAAGGGAATTGTTCTGGAGAAGATTGGTATTGAAGCCAAACAGCCCAATTCTGCTATCAGAAA GTGTGCTAGGGTTCAGCTCATCAAGAACGGGAAGAAGATTGCTGCCTTCGTTCCAAACGATGGTTGTCTGAACTACATTGAAGAAAATGACGAGGTGCTC ATTGCTGGTTTCGGTCGTAAGGGTCATGCTGTCGGAGATATTCCCGGTGTTCGTTTCAAGGTCGTGAAGGTCTCAGGTGTCTCCCTGTTGGCTCTATTCA AGGAGAAGAAGGAGAAGCCAAGATCTTAA
AA sequence Show only first row Show all	>Lus10026479 pacid=23164347 polypeptide=Lus10026479 locus=Lus10026479.g ID=Lus10026479.BGIv1.0 annot-version=v1.0 MGKTRGMGAARKLKDHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVL IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10026479 [exp]	0	1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015063 [exp]	1.4	0.9102
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10016970 [exp]	1.7	0.9299
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10029879 [exp]	2.4	0.8898
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10023825 [exp]	3.5	0.8846
AT4G15000			Ribosomal L27e protein family ...		Lus10010461 [exp]	4.9	0.8893
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10021296 [exp]	6.5	0.8820
AT2G18110			Translation elongation factor...		Lus10017261 [exp]	7.3	0.7878
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	8.1	0.8850
AT5G62440			Protein of unknown function (D...		Lus10021669 [exp]	8.1	0.8595
AT4G18100			Ribosomal protein L32e (.1)		Lus10004589 [exp]	8.9	0.8664

Compare expression of checked genes

Lus10026479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.