Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09080 234 / 3e-73 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G42020 231 / 1e-72 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 231 / 3e-72 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 206 / 6e-63 HSP70B heat shock protein 70B (.1) AT3G12580 195 / 1e-58 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G56410 191 / 4e-57 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 187 / 1e-56 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 187 / 8e-56 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 187 / 1e-55 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G09590 186 / 4e-55 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019911 [exp] 355 / 6e-126 AT5G28540 250 / 1e-79 heat shock protein 70 (Hsp 70) family protein (.1) Lus10019915 [exp] 338 / 3e-114 AT5G28540 321 / 2e-101 heat shock protein 70 (Hsp 70) family protein (.1) Lus10007777 [exp] 248 / 8e-83 AT5G28540 358 / 8e-121 heat shock protein 70 (Hsp 70) family protein (.1) Lus10022375 [exp] 253 / 1e-80 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10020977 [exp] 252 / 2e-80 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015483 [exp] 249 / 2e-79 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10028061 [exp] 242 / 1e-76 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10029103 [exp] 240 / 2e-76 AT5G28540 615 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10021345 [exp] 229 / 2e-72 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018000 [exp] 240 / 1e-75 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G087500 [exp] 233 / 6e-73 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 229 / 1e-71 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 224 / 2e-69 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 201 / 5e-61 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 196 / 7e-59 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G206600 [exp] 196 / 7e-59 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.003G184000 [exp] 194 / 2e-58 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 194 / 5e-58 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 192 / 1e-57 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10026480 pacid=23164379 polypeptide=Lus10026480 locus=Lus10026480.g ID=Lus10026480.BGIv1.0 annot-version=v1.0 ATGTTGAAGGTCAAAGCAGAGAAAATCGAACAAGAAGATGTGAAGCCGGCGATAAACGGAGGAGGAGATGTTGTGACAGGGATTGATCTCGGGACAACTT TCTCTTGCGTCGCCGTCGCAATCAACGGCAACCGAACAACTCCTTCCTCCGTTGCCTTCTCTGCCTTCAGTTCCGAGCGTCTCATCGGCGAAGCAGCCAA AAATCAGGCCATTCTAAACCTCCGCCGCACCGTCTTCGACGTCAAACGCCTCATCGGCAAGAAGTTCGACAACCCCGTGGTTCAAAAGGACATAAAATAT TTGCCTTATTCCGTGGTCAACAGAGATGGAAAGGCTTACGTGGAATTGGAGGTCAAAACCGGAGAAAAAATCAAAGCAGTCAGCCCGGAAGAAATCAGTA CCATGGTGTTGGGGAAGATGAAGGAAACCGCTGAATCTTATCTCGGAAAGCCGGTACACCAAGCCGTAGTGACAGTGCCGGCTTACTTCAACGACGCACA GAGGGAAGCCACCAAGAACGCTGGCACAATCGCCGGCCTCGACATCCTCCGCATCATCAACGAGCCTACTGCAGCTGCCCTAGCCTACGAATTCCAAAAT CAAAAGAATCCTCTCAAGAGGAAAAGGACGGCGGCCGCCAAGAGTGATTCTGGTGTATGA
AA sequence Show only first row Show all	>Lus10026480 pacid=23164379 polypeptide=Lus10026480 locus=Lus10026480.g ID=Lus10026480.BGIv1.0 annot-version=v1.0 MLKVKAEKIEQEDVKPAINGGGDVVTGIDLGTTFSCVAVAINGNRTTPSSVAFSAFSSERLIGEAAKNQAILNLRRTVFDVKRLIGKKFDNPVVQKDIKY LPYSVVNRDGKAYVELEVKTGEKIKAVSPEEISTMVLGKMKETAESYLGKPVHQAVVTVPAYFNDAQREATKNAGTIAGLDILRIINEPTAAALAYEFQN QKNPLKRKRTAAAKSDSGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10026480 [exp]	0	1
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	5.0	0.7193
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	6.9	0.6906
AT1G18490			Protein of unknown function (D...		Lus10027254 [exp]	17.4	0.6576
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	20.9	0.6824
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10018962 [exp]	25.1	0.6547
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10024280 [exp]	36.0	0.6725
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10030560 [exp]	42.4	0.6500
AT1G18530			EF hand calcium-binding protei...		Lus10027243 [exp]	61.4	0.6196
AT1G30670	bHLH	bHLH052	basic helix-loop-helix (bHLH) ...		Lus10038432 [exp]	65.4	0.5366
					Lus10029224 [exp]	85.6	0.6109

Compare expression of checked genes

Lus10026480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.