Plant FIBer expression Database

Lus10026481 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67590 64 / 1e-12 Remorin family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015817
[exp]
178 / 2e-55 AT1G67590 280 / 5e-92 Remorin family protein (.1.2)
Lus10041239
[exp]
160 / 1e-50 AT1G67590 72 / 6e-15 Remorin family protein (.1.2)
Lus10032549
[exp]
118 / 5e-32 AT5G50850 628 / 0.0 MACCI-BOU, Transketolase family protein (.1)
Lus10036997
[exp]
90 / 5e-24 AT1G67590 51 / 1e-08 Remorin family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G178300
[exp]
96 / 3e-24 AT1G67590 306 / 1e-102 Remorin family protein (.1.2)
Potri.010G056800
[exp]
92 / 5e-23 AT1G67590 253 / 8e-82 Remorin family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10026481 pacid=23164251 polypeptide=Lus10026481 locus=Lus10026481.g ID=Lus10026481.BGIv1.0 annot-version=v1.0
ATGGAGCAACGACCCTGGTTCATAATCAGCAAGAGATTCCTAGCAGCAATGGAGCAATCAGCTTCGAGTTTCATAAAGGTAAGCAGAACCGACAAGACAT
TTGCTTCAGCTAGGAATAATCACCGTCAGCAGCACCACAGGATTGCGTTGGGGAAGCCGACGCCGTCGAAATGGGACGACGCGCAGAAATGGGGCGCGCG
AGAATGGCTGGTGGGGTTACCGAGAGGCGGCGCTGGTGGAGGGGGAGGGGATAAGAATCAGATCCAGCATCCTCGGAATTCGAACGCCGACGATCGGCGG
TTGATTGCTCCGGTGCCGCAGCAGGAGCTGGAGTGCGACGACGAGTCGATTTGGCGGATTAATAAGCCAGCTGCCGGCGGTTCGATTAATCCGGTCGTCT
CTGCTGCTCCGCTGGCGATTCGGTCGATTTAG
AA sequence
>Lus10026481 pacid=23164251 polypeptide=Lus10026481 locus=Lus10026481.g ID=Lus10026481.BGIv1.0 annot-version=v1.0
MEQRPWFIISKRFLAAMEQSASSFIKVSRTDKTFASARNNHRQQHHRIALGKPTPSKWDDAQKWGAREWLVGLPRGGAGGGGGDKNQIQHPRNSNADDRR
LIAPVPQQELECDDESIWRINKPAAGGSINPVVSAAPLAIRSI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67590 Remorin family protein (.1.2) Lus10026481
[exp]
0 1
AT5G07380 unknown protein Lus10032518
[exp]
14.0 0.8246
AT5G08180 Ribosomal protein L7Ae/L30e/S1... Lus10040161
[exp]
14.3 0.8177
AT1G15320 unknown protein Lus10035916
[exp]
22.9 0.8162
AT3G15790 MBD11, ATMBD11 methyl-CPG-binding domain 11 (... Lus10002168
[exp]
24.0 0.8001
AT1G11050 Protein kinase superfamily pro... Lus10029714
[exp]
25.7 0.7647
AT3G45900 Ribonuclease P protein subunit... Lus10034732
[exp]
29.8 0.7958
AT5G56950 NFA3, NFA03, NA... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10001231
[exp]
31.2 0.7475
AT3G48710 DEK domain-containing chromati... Lus10025759
[exp]
31.9 0.8112
AT5G02130 NDP1 Tetratricopeptide repeat (TPR)... Lus10024371
[exp]
36.5 0.7999
AT1G63160 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replica... Lus10008003
[exp]
41.7 0.7801

Lus10026481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.