Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37080 400 / 3e-133 RIP3 ROP interactive partner 3 (.1) AT5G60210 319 / 4e-102 RIP5 ROP interactive partner 5 (.1.2) AT3G53350 193 / 7e-56 RIP4 ROP interactive partner 4 (.1.2.3) AT1G78430 82 / 9e-17 RIP2 ROP interactive partner 2 (.1) AT1G17140 60 / 1e-09 RIP1, ICR1 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019912 [exp] 662 / 0 AT2G37080 264 / 7e-83 ROP interactive partner 3 (.1) Lus10023173 [exp] 387 / 1e-129 AT2G37080 315 / 2e-101 ROP interactive partner 3 (.1) Lus10015064 [exp] 177 / 8e-50 AT2G37080 155 / 4e-42 ROP interactive partner 3 (.1) Lus10011643 [exp] 114 / 2e-28 AT5G60210 152 / 6e-43 ROP interactive partner 5 (.1.2) Lus10005576 [exp] 48 / 2e-05 AT1G17140 238 / 4e-76 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2) Lus10013708 [exp] 45 / 0.0001 AT1G17140 229 / 8e-73 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085900 [exp] 588 / 0 AT2G37080 474 / 2e-161 ROP interactive partner 3 (.1) Potri.006G131400 [exp] 561 / 0 AT2G37080 473 / 1e-160 ROP interactive partner 3 (.1) Potri.001G377900 [exp] 80 / 8e-16 AT1G78430 238 / 5e-76 ROP interactive partner 2 (.1) Potri.019G047600 [exp] 62 / 1e-09 AT5G16730 608 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.013G079000 [exp] 57 / 4e-08 AT5G16730 619 / 0.0 Plant protein of unknown function (DUF827) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026482 pacid=23164263 polypeptide=Lus10026482 locus=Lus10026482.g ID=Lus10026482.BGIv1.0 annot-version=v1.0 ATGCAGACACCAAAAGCAAAGGCCGTGTCGTCGGAGGTGCCTCCACGAAGATCGCCAGCTGGAACACCACGAACTGCTCGGCAACTCAAGGTGCCTGGAA CAGATTCAGATTCTGTCTCGTCCCCTAATCATGCGAGCAAGACTCCTAAAGACAGAAGTCCTAAGGTTCCCGAGCGCAAGTCGCCTAGAAGTCCTATCAC TGAGCAGAAGAAGCGGCCAAGTAAAGTTGCTGAATTGGAATCACAGCTAGCTCAGCTCCAGGAGGAGCTTAAGAAGACGAAAGATAAACTCAATGCTTCC GAGGCAAGTAAGAGGCAGGCTCAACAGGAAGCTGAAGACACAAAGAAGCAGCTCGTTTCCATGTCCTCAAAAGTTGAGGAGTGCCAACAGCAGCTCATGG AGCTGACTGCCTCCGACGATACTCGAGTTGAGGTGCTAGCCAAAATCTCCCACGACCGAGATAGAGCGTGGCAGTCCGAACTCGAAGCCGTCCAGAAGCA ACATTCGATGGATTCAGCCGCCTTGGCGACTGCCATGAACGAAATCCAGCGGCTGAAGAATCAGCTGCAAGTTGTAGTGGCTGAATCTGAATCAGCACAT GCTGAGTCAGAAATCGTCGAGACAATGAAATCTGAACTGTGTGATTATAGGAAGTCCGAAGCTGAGGCATTGGATGCTGTTAGCAAAGCTCGGAAGGAAT TGGAAACGAGTAATGCAAATGCTGAAAAGCTGCATGTGGATGGTATTAAGTCCGTGGAAGCTTGTGACCGGTTGGCGTTAGAGTTAGAGGAGTCGAAGGA TCGAGTCAAGTCCTTGGAGGAGCTTGTGAGCAAACTGAAGGAAAATTCAGAATCAGAATCTCCTCCAGAGAGAACGCAAAATGAAGAGGAGGAGATAAAC TCTTTGAAAGCTGAAGTGTGTCAACTGAGAGCCGATCTCAAAGCTTCCGAAGCAAGGTACCAGGAGGAGTACATTCAGAGTACACTGCAGATACGAGGAG CTTATGAACAAGTTGAACAAACGAAGCAGGAGTTAGCGGAAAGAGAGGCATACATTGATGAATTGAAGGCCATTATAAAGGACAAAGAAGCTCCTCAGAA GGAAGGTGATCTCGAGACCGATTTGAAGAAGTTGGAGTGTGAGTTCACAGAGTTGAAAGCAAGCCTGTTGGAGAAAGAGACACAAGTTAAAAGCTTAGCT GAACAGAATGAGATGCTAAACATGGAAATCAAGAGAGGTGAAGAAGAGAGGAGTAAATCCAATGACGAAGCTGCTGCTTTGGCCGAAACAGCTAAGGCAG CTGAGAGGGAAGCATTGATGAAACTTGGCTACATAACTGAGGAAGCAGATAAGAGCAGCAGGAGAGCAGCTAGGGTAACCGAGCAGCTCGAAGCATCTCA AGCTGCTAACTCGGAAATGGAAAGTGAACTTAGGAGGTTGAAAGTGCAGGCTGATCAATGGAGGAAGGCAGCTGAGGCAGCAGCGGCCATGCTCTCTACA GGGAACAACAATGGTGGGAAGTTCGTGGAGAGGACCGGTTCACTTGATAATAATAATGTCAATTACACCACCATAGCTGGGGCAATGGTGGGCTCGCCTT TCTCGGAGGATATGGATGATGAGTCGTTGAAGAAGAAGAATGGGAATGTGCTGAAGAAGATTGGCGTGTTGTGGAAGAAAGGCCAGAAGTAA
AA sequence Show only first row Show all	>Lus10026482 pacid=23164263 polypeptide=Lus10026482 locus=Lus10026482.g ID=Lus10026482.BGIv1.0 annot-version=v1.0 MQTPKAKAVSSEVPPRRSPAGTPRTARQLKVPGTDSDSVSSPNHASKTPKDRSPKVPERKSPRSPITEQKKRPSKVAELESQLAQLQEELKKTKDKLNAS EASKRQAQQEAEDTKKQLVSMSSKVEECQQQLMELTASDDTRVEVLAKISHDRDRAWQSELEAVQKQHSMDSAALATAMNEIQRLKNQLQVVVAESESAH AESEIVETMKSELCDYRKSEAEALDAVSKARKELETSNANAEKLHVDGIKSVEACDRLALELEESKDRVKSLEELVSKLKENSESESPPERTQNEEEEIN SLKAEVCQLRADLKASEARYQEEYIQSTLQIRGAYEQVEQTKQELAEREAYIDELKAIIKDKEAPQKEGDLETDLKKLECEFTELKASLLEKETQVKSLA EQNEMLNMEIKRGEEERSKSNDEAAALAETAKAAEREALMKLGYITEEADKSSRRAARVTEQLEASQAANSEMESELRRLKVQADQWRKAAEAAAAMLST GNNNGGKFVERTGSLDNNNVNYTTIAGAMVGSPFSEDMDDESLKKKNGNVLKKIGVLWKKGQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10026482 [exp]	0	1
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10019912 [exp]	1.4	0.9402
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Lus10014670 [exp]	1.7	0.8915
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10016722 [exp]	8.5	0.8616
AT5G13250			RING finger protein (.1)		Lus10001802 [exp]	13.3	0.8930
AT5G13250			RING finger protein (.1)		Lus10002575 [exp]	19.4	0.8845
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038066 [exp]	26.1	0.8617
AT2G40070			unknown protein		Lus10030402 [exp]	26.5	0.8337
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	28.4	0.8052
AT3G28420			Putative membrane lipoprotein ...		Lus10039459 [exp]	29.5	0.8194
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020832 [exp]	31.4	0.8876

Compare expression of checked genes

Lus10026482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.