Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09690 556 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G02970 555 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 138 / 2e-36 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G22460 136 / 1e-35 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G74280 132 / 8e-34 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 124 / 3e-31 alpha/beta-Hydrolases superfamily protein (.1) AT1G08310 123 / 4e-31 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48410 123 / 1e-30 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 122 / 2e-30 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 121 / 2e-30 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019914 [exp] 962 / 0 AT5G02970 625 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 144 / 3e-38 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 140 / 4e-37 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 136 / 2e-35 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 134 / 8e-35 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 136 / 1e-34 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 133 / 2e-34 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 132 / 7e-34 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 128 / 8e-33 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131300 [exp] 662 / 0 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 647 / 0 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 137 / 5e-36 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164600 [exp] 136 / 7e-36 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G237700 [exp] 134 / 4e-35 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 132 / 4e-34 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 133 / 5e-34 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 125 / 2e-31 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 121 / 3e-30 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 120 / 7e-30 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10026484 pacid=23164343 polypeptide=Lus10026484 locus=Lus10026484.g ID=Lus10026484.BGIv1.0 annot-version=v1.0 ATGGAGGAGGTCAGAGGAGGAGCAGACACGTGGCACGAGGAGCTAGCGACGCTAGTGGAGGACTCCAGGATACTGTACTCCGGAATGACGTTTGATCCGA ACGTACCGGACTACGTCGGCGCCCAAATGTACAGCGAAGTCGCTCCGGCGGCTACGGCGGAGACGGAGCCGAAGTCGGAGGAGAGTTTGAAGGAGCAGGT CACAGAGTTCGCAAAGGCTTGGGGAGAGCTGCTACTGGACTTGGTGAAAGGATGCAAGGACATTGCGGAGCAGAATCTGCTGGATAAGAATTCGTTGGTA GTTCAAAAGATTGGAAAGCCAATTGCTAAAGCATCTGGTCGGCTTGCGTTCATGAATGACTACTTTTTGCCCGAGGATCGCAATCCGGTCCACGCCTGGC CCGTTGTGTTCTTCGTTTTCTTACTCGCACTCTCAGCTTTGAGAGTAAATTCCCCAGATGAAAGTTCAGTAGCAGTTGTAAAGAAAATGCGTATACATCC TCCTTCTGCAAGTCGCATACCCTTAGCTGACGGTAGACACATAGCTTACCTTGACCGTGGTGTTCCAGCTGACCAAGCGAGATACTCTGTCATTTCTCCG CATTCTTTTCTTTCCTCTCGACTTGGAGATTTCTCTGGTATTGAGGCATCTCTGCTTGAAGAGTTCGGCATTCGGTTGATAACATATGACCTTCCGGGTT TTGGAGAGAGTGACCCTCATCCTGGCAGAACACTGAACTCATCTGCACAAGATATGGTTCACTTGGCCAATGCTATTGGTCTAGATGACAAATTCTGGGT TTTGGGTTTCTCAAGTGGAAGTATGCACTCTTGGGCTGCCCTAACATATATTCCTGACCGGATTGCAGGTGCTGCCATGTTCGCTCCAATGGTAAACCCA TATGATTCTAGCATGAACAAGGACGAGATGTCTAAAACATGGAAAAATTGGCTGTCAAGAAGAAAGCTAATGTATTTCTTGGCACGGAGATTTCCAAGTT TCCTCTCCTTTTTCTATCGCCGCAGCTTCTTATCAGGAAATCATGGTCAGATTGATAAGTGGATGTCTCAACCACTTGGAAGGAAGGATGAAATTCGTGT TAATGAGCCGACATTCGAAGAGTTTTGGCACAGAGACGTCGAGGAGTCGGTACGCCAAGGGAGCGTTAAACCCTTCGTCGAAGAAGCCGTACTGCAAGTA TCGAACTGGGGTTTCAATCTGGCCGATCTTCAGGTGCGAAGGGTGTGTCCGAAGAAGAGCCTTCTTCTTCGGCTGAGATCCATGTTTAGTGAGGAAGAAT GTGAACTCGCCGGTTTTCTTAAGCCAGTACACATATGGCAGGGAACGGATGATCAAGTAGTGCCCCCTTCGGTTGCCGAGTACATTAGCAGGATTCTACC AGGAGCGACGCTGCATAAGCTACCAAATGAAGGTCACTTCTCTTATTTCTTCTTTTGCAAAGAATGCCATCGACGAATTTTTTCGACAATTTTCGGAGAT GCTCTCGGCCCACTCCCTCTTGATGAGAACGTAGAAGAAGATGCTGTTGATGAATCTTCGTTTGCAGTAGAAAAAACTACCGCTGACGAAACTTCTGTTG CTAGCTCTTAG
AA sequence Show only first row Show all	>Lus10026484 pacid=23164343 polypeptide=Lus10026484 locus=Lus10026484.g ID=Lus10026484.BGIv1.0 annot-version=v1.0 MEEVRGGADTWHEELATLVEDSRILYSGMTFDPNVPDYVGAQMYSEVAPAATAETEPKSEESLKEQVTEFAKAWGELLLDLVKGCKDIAEQNLLDKNSLV VQKIGKPIAKASGRLAFMNDYFLPEDRNPVHAWPVVFFVFLLALSALRVNSPDESSVAVVKKMRIHPPSASRIPLADGRHIAYLDRGVPADQARYSVISP HSFLSSRLGDFSGIEASLLEEFGIRLITYDLPGFGESDPHPGRTLNSSAQDMVHLANAIGLDDKFWVLGFSSGSMHSWAALTYIPDRIAGAAMFAPMVNP YDSSMNKDEMSKTWKNWLSRRKLMYFLARRFPSFLSFFYRRSFLSGNHGQIDKWMSQPLGRKDEIRVNEPTFEEFWHRDVEESVRQGSVKPFVEEAVLQV SNWGFNLADLQVRRVCPKKSLLLRLRSMFSEEECELAGFLKPVHIWQGTDDQVVPPSVAEYISRILPGATLHKLPNEGHFSYFFFCKECHRRIFSTIFGD ALGPLPLDENVEEDAVDESSFAVEKTTADETSVASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02970			alpha/beta-Hydrolases superfam...		Lus10026484 [exp]	0	1
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	4.0	0.9227
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	5.2	0.9306
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10034788 [exp]	9.5	0.9213
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10021040 [exp]	10.5	0.9061
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	12.0	0.9181
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	13.4	0.8893
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10035579 [exp]	19.1	0.8897
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10003807 [exp]	19.7	0.8739
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	19.9	0.8944
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10028534 [exp]	23.8	0.8876

Compare expression of checked genes

Lus10026484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.