Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35795 115 / 5e-33 Chaperone DnaJ-domain superfamily protein (.1) AT5G03030 105 / 6e-29 Chaperone DnaJ-domain superfamily protein (.1) AT1G09080 110 / 1e-27 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G09700 100 / 5e-27 Chaperone DnaJ-domain superfamily protein (.1) AT5G42020 103 / 2e-25 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 103 / 3e-25 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 90 / 1e-20 HSP70B heat shock protein 70B (.1) AT3G12580 88 / 6e-20 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G56410 86 / 2e-19 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 86 / 4e-19 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019915 [exp] 154 / 1e-43 AT5G28540 321 / 2e-101 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015065 [exp] 122 / 4e-36 AT2G35795 118 / 3e-36 Chaperone DnaJ-domain superfamily protein (.1) Lus10015483 [exp] 129 / 2e-34 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10022375 [exp] 129 / 3e-34 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10007778 [exp] 115 / 1e-30 AT5G42020 318 / 5e-104 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10008324 [exp] 113 / 2e-30 AT1G09080 261 / 3e-83 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10041420 [exp] 109 / 3e-30 AT2G35795 194 / 2e-65 Chaperone DnaJ-domain superfamily protein (.1) Lus10020977 [exp] 114 / 3e-29 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017022 [exp] 112 / 2e-28 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131200 [exp] 114 / 1e-32 AT2G35795 195 / 2e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G018000 [exp] 113 / 8e-29 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.008G043500 [exp] 104 / 8e-29 AT2G35795 179 / 4e-60 Chaperone DnaJ-domain superfamily protein (.1) Potri.012G038800 [exp] 101 / 1e-27 AT2G35795 160 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1) Potri.012G017600 [exp] 104 / 9e-26 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G087500 [exp] 103 / 2e-25 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 102 / 8e-25 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G042700 [exp] 92 / 2e-21 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.003G184000 [exp] 91 / 6e-21 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 89 / 2e-20 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10026485 pacid=23164246 polypeptide=Lus10026485 locus=Lus10026485.g ID=Lus10026485.BGIv1.0 annot-version=v1.0 ATGGATTTGTTCAACAAGACACTGGATATTGTAAAGACAACGCTGGAAGATGGCAAGGTGAAGAAAAGCGAGGTGGAGGAGATCGTACTGGTTGGAGGAA GCACAAGGATCGTAAAGGTGAGGGAGATGTTAAAGCAGTTTTTCGATGGGAAAGAGCCCAACGATGGTGTGAATCCTGATGAAGCTGTGGCTTACGGTGC TGCAGTTCTTGCTGCCAAACTCAGCGGTCAACCTCATCGTTCTGCTGAATACGTTAGTGTTTTCTTCTTCTGTCTTATTCTTACTGAAGGTGATTTGAAT CGTGTAATAATTCCAAGAAACACTCTTGTTCCTGCAAAGATGTCAAGAAATTACTGCACGTCTGTAGACCAACAAATCAGTATGAATATCACTGCGACAC CATTCATAACAGGATGCGCAGTGGCCGGAGCTGCTTATGCCGCGAGATTCACCATCCAGGCCTGGCAAGCTCTGAAGACGGCTCCGCGTGCATTCTACAA AGGCGGGTTTCAACCTGCCATGACGAAAAGAGAAGCCGCCCTTATACTGGGAGTAAGGGAAACGACTCCAGCGAAAGATGTGAAGGACGCTTACAGGAGA ATCATGAAGGTCAACCATCCTGATCAAGGCGGTAGTCACTACATATCAAACAAAGTCAACTAA
AA sequence Show only first row Show all	>Lus10026485 pacid=23164246 polypeptide=Lus10026485 locus=Lus10026485.g ID=Lus10026485.BGIv1.0 annot-version=v1.0 MDLFNKTLDIVKTTLEDGKVKKSEVEEIVLVGGSTRIVKVREMLKQFFDGKEPNDGVNPDEAVAYGAAVLAAKLSGQPHRSAEYVSVFFFCLILTEGDLN RVIIPRNTLVPAKMSRNYCTSVDQQISMNITATPFITGCAVAGAAYAARFTIQAWQALKTAPRAFYKGGFQPAMTKREAALILGVRETTPAKDVKDAYRR IMKVNHPDQGGSHYISNKVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10026485 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10038940 [exp]	5.2	0.9437
AT1G61215		BRD4	bromodomain 4 (.1)		Lus10011227 [exp]	10.0	0.9215
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	10.2	0.9201
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	12.3	0.9201
AT4G21920			unknown protein		Lus10001143 [exp]	16.2	0.9236
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10041699 [exp]	17.9	0.9251
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	18.4	0.9252
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10025557 [exp]	21.0	0.9122
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	28.1	0.9215
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	30.1	0.9193

Compare expression of checked genes

Lus10026485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.