Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03040 345 / 3e-113 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 250 / 9e-77 IQD1 IQ-domain 1 (.1.2) AT3G52290 239 / 6e-73 IQD3 IQ-domain 3 (.1) AT2G26410 140 / 1e-35 IQD4 IQ-domain 4 (.1) AT2G33990 96 / 8e-22 IQD9 IQ-domain 9 (.1) AT3G59690 92 / 2e-19 IQD13 IQ-domain 13 (.1) AT2G26180 91 / 3e-19 IQD6 IQ-domain 6 (.1) AT2G43680 91 / 6e-19 IQD14 IQ-domain 14 (.1.2.3) AT3G22190 88 / 2e-18 IQD5 IQ-domain 5 (.1.2) AT3G15050 86 / 2e-18 IQD10 IQ-domain 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019916 [exp] 728 / 0 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10015067 [exp] 339 / 1e-113 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 293 / 7e-94 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 292 / 3e-92 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10015068 [exp] 164 / 7e-47 AT5G03040 202 / 4e-63 IQ-domain 2 (.1.2.3) Lus10025593 [exp] 96 / 1e-20 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10013362 [exp] 94 / 2e-20 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10027059 [exp] 95 / 3e-20 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10013522 [exp] 88 / 4e-18 AT2G26180 403 / 2e-138 IQ-domain 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G086300 [exp] 445 / 4e-152 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 437 / 5e-149 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 327 / 5e-106 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.006G226600 [exp] 110 / 8e-26 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.001G215200 [exp] 102 / 4e-23 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.019G095700 [exp] 99 / 1e-21 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.013G127200 [exp] 95 / 2e-20 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.018G062001 [exp] 90 / 4e-20 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.015G012500 [exp] 92 / 2e-19 AT3G49260 213 / 9e-64 IQ-domain 21 (.1.2.3) Potri.009G015800 [exp] 91 / 2e-19 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10026486 pacid=23164298 polypeptide=Lus10026486 locus=Lus10026486.g ID=Lus10026486.BGIv1.0 annot-version=v1.0 ATGATAGTAGGACCCACTTCATGGGGCTCACTCAGTCACAGCACAGACTCGGCCAAAAAAAACCAGCTGGGGATTATTGTGGGGTCTGCTACTTCTGCTT CTTCTGTTCTTCCAATTCAATCCCCTTTTTTCTCTCTCGTTGTATTTATTACTAATTTAATTATCATTGCTATTATTATACTACTTGTTCTCTTTTTCTC TACTTTAATCCAAAGGATAGATCTGAAGCATCTCCTTTTCCCCTTCTTTCTCTTTGTGTCATCGCATTTCTCCCCTAGCTTCAGAGCAAAGTTAGGAAGG AGGACGACTGAAGGGTTTGAAGTGAGGAATGTTAAGGAAGTGATGGGGAGGAAAGGGAAGTGGTTCTCCAGTGTGAAGAAAGCTCTCAGCCCTTCTCCTA AGGAAAAGAAACACCAGAACTCTAGTAAATCCCATTTTGCCAAGCAGAATCCGGAAACCTGTTCGACTCCTCCAGTTGAAGATGTTGTTGCACCACCATC ACTTCCTCCTCCACAGCCTGAGGACTTTACAGTATTAGAGACCAGTAATGAAAGTAATACTAATGTTGAGGCTCCTGAGCCTATTGTTGAGACAACAGTG GAAGTTGTTAGAGCGGCGAAACCTAACAAATTCGCTGGGAAATCGGAGGAGGAAGCTGCAGCAATCTGGATTCAAACTGCATTCAGGGGCTATCTGGCTA GGAGGGGATTGAGGGCTTTGAGAGGATTGGTTAGGCTGAAGCAACTGATGGAAGGTCCTACTGTGAAGAGGCAAGCTGTTCACACTCTCCGCTGCATGCA AACTCTATCTCGTGTCCAGACTCAAATCCATACCAGGAGAGTCAGAATGTCTGAAGAAAACCAGGCCCTTCAGAGACAACTCTTGCAAAAACACGCCAAG GAGCTAGAGAGCTTACGGATGAAAGAGCAATGGGATGATAGCTTGCAGTCGAAGGAAAAGATCGAGAGCAACTTACTAAGCAAGTATGAGGCAACAATGA GAAGGGAAAGAGCACTAGCTTATGCATTTTCCCATCAGCAAAGCTTGAAGAATCCTTCAAGATCAAACACAACTATGTTCATGACTCCTGGCAATCCCTC CTGGGGATGGAGCTGGCTCGAGCGATGGATGTCGGCTCATCCAGACAAAGAAGTCAACAATGATCAAGCTTCTGTAAAGAGTGGAAGCCGCAGTTTGGTT GGCGGAGAAATCAGCAGAGCTTATGCCCGTTACCAGCTCAACTCAGATAAACTTTTCTCGCCAGGAGATAATCAAGCCGACACGATAAGCATACATTCCT CTTCAGCAAAATCCAAGCAAGCACCTTCAAGAAAACTCAAGCCAGCAAGTCCCAGGAGCAGCATTGGAGTCCCAGACGATGACACGAGAAGCATGGTTAG TATGCAGTCACATAGAAGACACAGCATTGCAGGATCATCCGTACGTGGTGACGATGAAAGCTCTCTTCCGAGCTATATGGTACCGACACAGTCTGCAAAA GCTAAGTCCAGGCTGCAGAGTCCATTAGGAATAGGTGGAGTATCAGAGGATAATGTGGCTAATGCGCCACTGGCATCTGCAAAGAAGAAGCTTTCTTATC CATCATCAGCCAAGCCGAGGCGACATTCGGGTCCTCCTAAGGTGGATTCCAGCTTGATCAAGGCTGTGAATGGTGTGGTGAGAAATGGAGATGTCGGTTG A
AA sequence Show only first row Show all	>Lus10026486 pacid=23164298 polypeptide=Lus10026486 locus=Lus10026486.g ID=Lus10026486.BGIv1.0 annot-version=v1.0 MIVGPTSWGSLSHSTDSAKKNQLGIIVGSATSASSVLPIQSPFFSLVVFITNLIIIAIIILLVLFFSTLIQRIDLKHLLFPFFLFVSSHFSPSFRAKLGR RTTEGFEVRNVKEVMGRKGKWFSSVKKALSPSPKEKKHQNSSKSHFAKQNPETCSTPPVEDVVAPPSLPPPQPEDFTVLETSNESNTNVEAPEPIVETTV EVVRAAKPNKFAGKSEEEAAAIWIQTAFRGYLARRGLRALRGLVRLKQLMEGPTVKRQAVHTLRCMQTLSRVQTQIHTRRVRMSEENQALQRQLLQKHAK ELESLRMKEQWDDSLQSKEKIESNLLSKYEATMRRERALAYAFSHQQSLKNPSRSNTTMFMTPGNPSWGWSWLERWMSAHPDKEVNNDQASVKSGSRSLV GGEISRAYARYQLNSDKLFSPGDNQADTISIHSSSAKSKQAPSRKLKPASPRSSIGVPDDDTRSMVSMQSHRRHSIAGSSVRGDDESSLPSYMVPTQSAK AKSRLQSPLGIGGVSEDNVANAPLASAKKKLSYPSSAKPRRHSGPPKVDSSLIKAVNGVVRNGDVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10026486 [exp]	0	1
AT5G10290			leucine-rich repeat transmembr...		Lus10000629 [exp]	2.2	0.8837
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10014225 [exp]	7.1	0.8896
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10027949 [exp]	11.0	0.8874
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	11.6	0.8908
AT3G07510			unknown protein		Lus10038243 [exp]	12.8	0.8450
AT1G10210		ATMPK1	mitogen-activated protein kina...		Lus10033197 [exp]	13.1	0.8640
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10019916 [exp]	16.6	0.8356
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Lus10004525 [exp]	17.5	0.8536
AT1G63500			Protein kinase protein with te...		Lus10008530 [exp]	18.8	0.8766
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	18.9	0.8860

Compare expression of checked genes

Lus10026486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.