Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60390 782 / 0 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 782 / 0 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 782 / 0 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 782 / 0 GTP binding Elongation factor Tu family protein (.1) AT1G18070 242 / 7e-75 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G10630 242 / 1e-73 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT1G35550 176 / 1e-54 elongation factor Tu C-terminal domain-containing protein (.1) AT4G02930 148 / 5e-40 GTP binding Elongation factor Tu family protein (.1) AT4G20360 140 / 5e-37 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT2G31060 59 / 2e-09 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023174 [exp] 805 / 0 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10019918 [exp] 805 / 0 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10040378 [exp] 786 / 0 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 786 / 0 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10015070 [exp] 690 / 0 AT1G07930 684 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10020153 [exp] 266 / 9e-83 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10026952 [exp] 266 / 2e-79 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041996 [exp] 238 / 2e-73 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018000 [exp] 238 / 9e-73 AT1G18070 792 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G130900 [exp] 788 / 0 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 784 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 784 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 784 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 780 / 0 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 780 / 0 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 779 / 0 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 779 / 0 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.016G086500 [exp] 486 / 2e-174 AT5G60390 479 / 5e-171 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.018G006500 [exp] 257 / 2e-79 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026488 pacid=23164305 polypeptide=Lus10026488 locus=Lus10026488.g ID=Lus10026488.BGIv1.0 annot-version=v1.0 ATGAACAAGAGGTCATTCAAGTACGCATGGGTGTTGGACAAGCTTAAGGCTGAGCGTGAGCGTGGTATCACTATTGATATTGCTCTGTGGAAGTTCGAGA CCACTAAGTACTACTGCACTGTCATCGATGCACCTGGACATCGTGATTTCATCAAGAACATGATTACTGGTACCTCACAGGCTGACTGTGCCATCCTTAT TATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGGCAGACCCGTGAGCATGCTCTTCTGGCCTTCACCCTTGGTGTGAAGCAGATG ATCTGCTGCTGTAACAAGATGGATGCCACCACTCCCAAGTACTCGAAGTCCAGGTTCGATGAAATCGTCAAGGAAGTTTCATCCTACTTGAAGAAGGTCG GATACAACCCTGACAAAATCCCATTCGTTCCGATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCAACCAACCTTGACTGGTACAAGGGCCCAAC CCTTCTTGAGGCTCTGGACCAGATCAACGAGCCCAAGAGACCCTCAGACAAGCCCCTCCGTCTGCCACTTCAGGATGTGTACAAGATCGGTGGTATTGGA ACTGTGCCAGTGGGACGTGTGGAGACTGGAGTCCTCAAGCCTGGTATGGTCGTCACCTTCGGCCCTACTGGTCTGACCACTGAAGTCAAGTCCGTCGAGA TGCACCACGAAGCTCTGCAGGAGGCTCTTCCAGGTGACAACGTTGGTTTCAATGTTAAGAATGTTGCAGTCAAGGATATCAAGCGTGGCTACGTTGCTTC CAACTCCAAGGATGACCCCGCCAGGGAAGCTGCCAACTTCACATCTCAGGTCATCATCATGAACCACCCTGGTCAGATTGGAAACGGATATGCTCCAGTC CTGGATTGCCACACCTCCCACATTGCTGTGAAGTTCTCTGAGATCCTCACCAAGATTGACAGGCGATCTGGTAAGGAGCTTGAGAAGGAGCCCAAGTTTT TGAAGAATGGTGATGCAGGTATGGTGAAGATGATCCCAACCAAGCCCATGGTTGTGGAGACTTTCTCCCAGTACCCTCCTCTTGGACGTTTTGCCGTCAG GGACATGAGACAGACTGTTGCAGTGGGAGTCATCAAAAGCGTCGAGAAGAAGGACCCATCTGGTGCCAAGGTCACCAAGTCTGCAGCCAAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10026488 pacid=23164305 polypeptide=Lus10026488 locus=Lus10026488.g ID=Lus10026488.BGIv1.0 annot-version=v1.0 MNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAILIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQM ICCCNKMDATTPKYSKSRFDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIG TVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDIKRGYVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPV LDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07920			GTP binding Elongation factor ...		Lus10026488 [exp]	0	1
AT1G07920			GTP binding Elongation factor ...		Lus10019918 [exp]	1.0	0.8968
AT4G26810			SWIB/MDM2 domain superfamily p...		Lus10038799 [exp]	1.7	0.8799
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10012113 [exp]	13.3	0.8562
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	15.0	0.8837
					Lus10038397 [exp]	16.2	0.8317
AT4G15770			RNA binding (.1)		Lus10037509 [exp]	19.0	0.8796
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10018487 [exp]	20.3	0.8629
AT3G16780			Ribosomal protein L19e family ...		Lus10037707 [exp]	20.4	0.8766
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10031983 [exp]	20.4	0.8619
AT5G14050			Transducin/WD40 repeat-like su...		Lus10038375 [exp]	31.7	0.8735

Compare expression of checked genes

Lus10026488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.