Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03080 292 / 8e-101 Phosphatidic acid phosphatase (PAP2) family protein (.1) AT3G50920 40 / 0.0005 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019919 [exp] 303 / 1e-105 AT5G03080 238 / 2e-80 Phosphatidic acid phosphatase (PAP2) family protein (.1) Lus10028327 [exp] 56 / 6e-09 AT3G50920 156 / 2e-46 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028326 [exp] 46 / 7e-06 AT5G66450 160 / 2e-48 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028328 [exp] 46 / 7e-06 AT5G66450 232 / 2e-76 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10041774 [exp] 46 / 1e-05 AT5G66450 229 / 3e-75 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10041773 [exp] 41 / 0.0003 AT3G50920 101 / 7e-30 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G130700 [exp] 315 / 4e-110 AT5G03080 313 / 2e-109 Phosphatidic acid phosphatase (PAP2) family protein (.1) Potri.016G086700 [exp] 291 / 1e-100 AT5G03080 297 / 4e-103 Phosphatidic acid phosphatase (PAP2) family protein (.1) Potri.005G120400 [exp] 53 / 2e-08 AT5G66450 219 / 9e-71 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.007G021600 [exp] 51 / 1e-07 AT5G66450 240 / 1e-78 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10026489 pacid=23164419 polypeptide=Lus10026489 locus=Lus10026489.g ID=Lus10026489.BGIv1.0 annot-version=v1.0 ATGCCGCCATTGAAGGCCGTTACCCTCACCCACGTCCGGTACCAGAGAGGCGACCAATTAGGCCATTTCCTCGCCTGGATCTCACTCGTCCCGGTCTTCA TCAGCTTCGGCGGATTCGTCTCCCATTTCATCTTCCGCCGCGAGCTCCAGGCCATGTTCTTCGCCCTAGGCCTCCTCATCTCCCAATTCGTCAACGAAGT CGTCAAGAACACCTTCCAGCAGGCCCGCCCCATCACCTGCGAGCTCCTCGAGATGTGCGATTCCCACGGCTGGCCCTCCAGCCACTCCCAGTACATGTTC TTCTTCGCCACCTATTTCACCATGCTCATGGTCAAAGGGATCGGCCTCGCCGAGTCGATTCGGAACAAGGCGCTCGCGTTTTACCTGGCCTGGTCTATGG CGGCACTTACGATGTACTCGCGGGTGTATTTAGGGTACCACACGGTGGCGCAGGTGTTCGCCGGGGCTACATTGGGGCTTTTCCTCGGCGGGGTGTGGTT CTGGGTGGTGAACTCGGTGCTTATCATCTACTTTCCGGCGATCGAGGAGAGTAGATTAGGGAGGATGTTCTATGTGAAGGATACCTCCCATATACGCAAT GTGTTGCAGTTTGAGTATGATAATGCCAGAGCTGCTAGGACGAATATGGCTGCTAGGAAGGTTATGGATCCCAAGACAATCTGA
AA sequence Show only first row Show all	>Lus10026489 pacid=23164419 polypeptide=Lus10026489 locus=Lus10026489.g ID=Lus10026489.BGIv1.0 annot-version=v1.0 MPPLKAVTLTHVRYQRGDQLGHFLAWISLVPVFISFGGFVSHFIFRRELQAMFFALGLLISQFVNEVVKNTFQQARPITCELLEMCDSHGWPSSHSQYMF FFATYFTMLMVKGIGLAESIRNKALAFYLAWSMAALTMYSRVYLGYHTVAQVFAGATLGLFLGGVWFWVVNSVLIIYFPAIEESRLGRMFYVKDTSHIRN VLQFEYDNARAARTNMAARKVMDPKTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03080			Phosphatidic acid phosphatase ...		Lus10026489 [exp]	0	1
AT5G03080			Phosphatidic acid phosphatase ...		Lus10019919 [exp]	1.4	0.9612
AT5G67020			unknown protein		Lus10019345 [exp]	1.4	0.9349
AT1G28680			HXXXD-type acyl-transferase fa...		Lus10015303 [exp]	4.5	0.9210
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10040428 [exp]	5.5	0.9268
AT2G36300			Integral membrane Yip1 family ...		Lus10021374 [exp]	6.5	0.9206
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10002440 [exp]	8.5	0.9115
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031743 [exp]	9.4	0.9150
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	11.3	0.9232
AT3G52760			Integral membrane Yip1 family ...		Lus10017054 [exp]	13.9	0.9196
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10005505 [exp]	14.7	0.8846

Compare expression of checked genes

Lus10026489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.