Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019921 [exp] 71 / 7e-18 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026491 pacid=23164307 polypeptide=Lus10026491 locus=Lus10026491.g ID=Lus10026491.BGIv1.0 annot-version=v1.0 ATGGAGCTCAGAAATCTTTCTCCTCCCAGTACTCCCAAAGTAGCCGCTTTGCTTATCATTACGTCTCTTCTTCTCCTCACTTTTGCTGTTTCCTCTTCCT CTGCCACCGTCACAGATGAACCGATGAAGCCGGCGGCGGTGGCTGAGGCAGAGTACGATGTAGACTACAGGGGACCGGAGACTCACCCAGCCGATTTCCC ACCGGCGCCGACCGGTCATCATTTAGGGGCAGGACACCTTTCCACCCCGCCGATTTTTGGTTGGGATTGA
AA sequence Show only first row Show all	>Lus10026491 pacid=23164307 polypeptide=Lus10026491 locus=Lus10026491.g ID=Lus10026491.BGIv1.0 annot-version=v1.0 MELRNLSPPSTPKVAALLIITSLLLLTFAVSSSSATVTDEPMKPAAVAEAEYDVDYRGPETHPADFPPAPTGHHLGAGHLSTPPIFGWD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10026491 [exp]	0	1
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	2.4	0.7781
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10027327 [exp]	5.7	0.7414
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10018617 [exp]	6.3	0.7414
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010469 [exp]	6.6	0.7277
					Lus10016118 [exp]	7.4	0.7277
AT5G39300		ATHEXPALPHA1.18...	EXPANSIN 25, expansin A25 (.1)		Lus10000305 [exp]	8.4	0.6796
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005660 [exp]	12.0	0.6504
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041913 [exp]	13.4	0.6948
AT5G17200			Pectin lyase-like superfamily ...		Lus10014826 [exp]	18.0	0.6476
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10027843 [exp]	22.8	0.6662

Compare expression of checked genes

Lus10026491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.