Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37110 283 / 1e-96 PLAC8 family protein (.1) AT2G40935 70 / 2e-14 PLAC8 family protein (.1.2.3) AT3G18450 55 / 5e-09 PLAC8 family protein (.1) AT1G68630 54 / 9e-09 PLAC8 family protein (.1) AT3G18460 50 / 2e-07 PLAC8 family protein (.1) AT3G18470 42 / 9e-05 PLAC8 family protein (.1) AT1G58320 39 / 0.0007 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019922 [exp] 421 / 1e-150 AT2G37110 303 / 3e-104 PLAC8 family protein (.1) Lus10015072 [exp] 329 / 1e-114 AT2G37110 306 / 4e-106 PLAC8 family protein (.1) Lus10023176 [exp] 325 / 1e-112 AT2G37110 299 / 7e-103 PLAC8 family protein (.1) Lus10005257 [exp] 68 / 1e-13 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10034298 [exp] 47 / 2e-06 AT1G14870 160 / 7e-51 PLANT CADMIUM RESISTANCE 2 (.1) Lus10043325 [exp] 45 / 2e-05 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10028184 [exp] 42 / 0.0002 AT2G45010 319 / 2e-111 PLAC8 family protein (.1.2) Lus10027214 [exp] 41 / 0.0004 AT2G45010 336 / 1e-117 PLAC8 family protein (.1.2) Lus10038926 [exp] 41 / 0.0005 AT2G45010 342 / 4e-118 PLAC8 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G130300 [exp] 305 / 2e-105 AT2G37110 320 / 1e-111 PLAC8 family protein (.1) Potri.016G087200 [exp] 296 / 9e-102 AT2G37110 309 / 4e-107 PLAC8 family protein (.1) Potri.006G024900 [exp] 69 / 4e-14 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.010G108900 [exp] 45 / 2e-05 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.002G141600 [exp] 43 / 9e-05 AT2G45010 303 / 6e-105 PLAC8 family protein (.1.2) Potri.010G127700 [exp] 42 / 0.0001 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1) Potri.010G109100 [exp] 41 / 0.0003 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.001G124500 [exp] 41 / 0.0003 AT5G51400 330 / 1e-115 PLAC8 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10026492 pacid=23164330 polypeptide=Lus10026492 locus=Lus10026492.g ID=Lus10026492.BGIv1.0 annot-version=v1.0 ATGGATAACAACAGCACCTCCGCCAATACCCAGTCCTCCTCCAACGAAGATAGCCAGGAATCCAGCCCTCTCTTGAACAAGACCGTCCAAGAAGAAGAAC ATTTAACCACCAAGGTCGACGGCAAGACCGCACCAGCTCCTTCTCCGGCGAAATCGGCCCAGGAATGCTCTGCTGCGCACCATGGATGGACGGCGAACGG ATTGCCGCTGGGACACGGAAGCGTGGTCGGAGAGCCCATGGGTCGCGCTCAATGGGATTCAGGGATCTGCGATTGCCTTGGCCGCAACGACGATTTCTGC GGCAGCGATCTTGAAGTCTGTCTGCTCGGCAGTGTTGCTCCATGTGTGTTGTATGGCACCAATGCTGAGCGACTGGGATCCACACCTGGAACATTTGCAA ACCACTGCTTGCCTTACACTTGCCTCTACTTTCTCGGCAATTCTGTGTTTGGCTGGAATTGCCTTGCTCCATGGTTTTCATTCAGAAGCCGCACTGCTAT GCGTCGTAGTTGGAAACAGGGAAGCTGCGAGGCACTGGATAGTTCATGTGGATGCCGCGGTGGGAGCTACGTCGAAGAGGAGTTCGAACGCGAGCAATGT GAAACAGCATGTGATTTTGCTACTCATGTGTTCTGCCACCCGTGTGCCCTTTGCCAGGAAGGCCGTGAGATTCGTCGCAGGGTGCCTCATCCGGGCTTTA AGCCTCAACCAATGCTGGTCATGCTCCCTCCCGGAGGCCAGGCTATGGGTCGCGAGGGTTGA
AA sequence Show only first row Show all	>Lus10026492 pacid=23164330 polypeptide=Lus10026492 locus=Lus10026492.g ID=Lus10026492.BGIv1.0 annot-version=v1.0 MDNNSTSANTQSSSNEDSQESSPLLNKTVQEEEHLTTKVDGKTAPAPSPAKSAQECSAAHHGWTANGLPLGHGSVVGEPMGRAQWDSGICDCLGRNDDFC GSDLEVCLLGSVAPCVLYGTNAERLGSTPGTFANHCLPYTCLYFLGNSVFGWNCLAPWFSFRSRTAMRRSWKQGSCEALDSSCGCRGGSYVEEEFEREQC ETACDFATHVFCHPCALCQEGREIRRRVPHPGFKPQPMLVMLPPGGQAMGREG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	0	1
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	1.0	0.9236
AT5G55340			MBOAT (membrane bound O-acyl t...		Lus10022293 [exp]	1.4	0.9178
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10029221 [exp]	2.8	0.9083
AT1G08700		PS1	Presenilin-1 (.1)		Lus10009518 [exp]	3.2	0.8892
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	3.7	0.8996
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	4.6	0.9129
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10012171 [exp]	4.9	0.8864
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032155 [exp]	5.0	0.9060
AT2G42005			Transmembrane amino acid trans...		Lus10022995 [exp]	5.7	0.8965
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	7.3	0.8907

Compare expression of checked genes

Lus10026492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.