Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53380 840 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 564 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 519 / 6e-176 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 400 / 3e-130 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 362 / 2e-115 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 360 / 6e-115 RLK receptor lectin kinase (.1) AT4G02410 354 / 2e-112 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 345 / 4e-109 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 343 / 2e-108 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 343 / 4e-108 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019923 [exp] 1192 / 0 AT3G53380 927 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016620 [exp] 546 / 3e-173 AT5G55830 826 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029769 [exp] 404 / 3e-131 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10042795 [exp] 395 / 4e-128 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 386 / 1e-124 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 383 / 2e-123 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 380 / 4e-122 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 369 / 3e-118 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 365 / 2e-116 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G087800 [exp] 946 / 0 AT3G53380 881 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G130000 [exp] 943 / 0 AT3G53380 866 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 564 / 0 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G368300 [exp] 560 / 0 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G101000 [exp] 407 / 7e-133 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 404 / 8e-132 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 387 / 3e-125 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 382 / 2e-123 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.005G189500 [exp] 382 / 4e-123 AT5G42120 671 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088400 [exp] 377 / 3e-121 AT2G37710 800 / 0.0 receptor lectin kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10026493 pacid=23164254 polypeptide=Lus10026493 locus=Lus10026493.g ID=Lus10026493.BGIv1.0 annot-version=v1.0 ATGTTGCCTTCTCCTCCCCTTATTGCACTCTCCGTCTTCATCCTCTCTTCTTTGACCACCACCTTCATTTCCGCCGCCACCGAATTTGACTTCGGGACGC TCACTCTCAGCAGTCTCAAGCTAATCGGCGACGCTCACTTGAACAATGGCAGTGTCCGCCTCACTCGCGATCTCGCCGTCCCTAATTCCGGCTCCGGGAG AGCTCTCTATTCCAAGCCGATTCGGTTCCGAAATCCTGGGACTCACTCAATCACCAGCTTCTCCACCTTCTTCTCCTTCACCGTCACCGACTTAAACCCC TCCTCGATCGGCGGGGGCCTCGCCTTTCTGATTTCGCCAGTCCCCGACGCGATTGGCGCCGCCGGAGGATGCCTGGGCCTCTTCAGCGCCGACGGACTTG CTGCCGGATTCGTGGCTGTCGAATTCGACACCCTGATGGACGTGGAGTTCAAGGACATTAATGGAAATCACGTCGGATTGGACCTCAATAGTATGGTTTC TTCACAGGTTGGGGATTTGGAAGCGGTGGATATAGATCTCAAGAGCGGTGATCTTGTCAACGCTTGGATCAATTATGACGGGTCAACCCGGGTGCTTAAT GTCTCGGTTTCTTACTCTAGTCAGAAGCCGAAGGAGCCGATTCTATCGGCGAGTCTCGATCTCGATCCGTACGTCAACGATTTTATGTACGTCGGATTCT CTGGGTCGACTCAGGGGAGCACCGAAATTCACAGCGTCGAGTGGTGGAGCTTCAGCTCTCTATTCGACTCGACGACGCCATCTGGCAGTAACGGTAGTCC CAGTCCTGTATCCGCTGCTGTTCCGCCGCCGCCTCCGGGGATTACTCTGCTCAATCCGACGGCGGATTCCATCAAAGCAGCGCCGCCGCCGTCATTGCCT CCGACAGCAATCGGCAGCAATCAACAGAAGAGCAGCAAATCCTCTTCCTCCTGTCACAACCAGCTCTGCAAGCAAGGGCCAGGAGCGGTGGCCGGAGTAG CAACCGCCAGCGCATTTCTCGTGATTTTCGCCGGAGTCCTAATCTGGATATTTTCCAAGAGAACAAAAAAGGTGAAAAGGTCGTCGGAGTTATTCGCATC GGAGGTAATCAAAATGCCGAAGGAATTCACATATAAGGAGCTCAGATCAGCTACCAATTGCTTCAACTCCAATCGAATCATCGGCCACGGCGCTTTCGGC ACCGTGTACAAAGGCATCATCCCGGAAACCGGCGACATTGTAGCGGTGAAGAAATGTTCTCACAACGGGCAAGGTAAGAACGAATTCCTGTCGGAATTAT CAATAATCGGAACCCTCCGGCACAGGAATCTCGTCCGATTAATTGGATGGTGTCACGAGAAAGGCGAGATTCTATTAGTCTACGATTTGATGCCCAACGG AAGCCTGGACAAGGCGTTATTCGAGTCGAGGATGATTCTCCCATGGCCGCACAGGCGGAAAGTCTTAAACGGCGTCGCATCGGCGCTAGCATATCTGCAT CAAGAATGCGAGAATCAAGTAATCCACCGCGACATTAAATCCAGCAACGTTATGCTGGACGAAGGTTTCAACGCTAGGCTGGGAGATTTCGGGTTAGCAA GACAAGTGGAACACGACAAATCCCCTGACGCCACGGTAGCCGCCGGGACGATGGGGTATTTGGCGCCGGAGTATCTTCTAACCGGCAGAGCCACAGAGAA GACCGACGTGTTCAGCTACGGGGCGGTGGTTCTGGAGGTGGCGAGCGGAAGGAGGCCGATCGAGAAAGACGCGGCCTCCACCGGAGGCAATTTGGTAGAG TGGGTGTGGACCCTACACCGCGAAGGGAGGCTGTTGACGGCGGCCGACCCGAGGCTGGAAGGGGAGTTCGAGGAAGGGGAAATGCGGAGGGTACTGTTAG TGGGCCTCGCCTGCTCGCACCCGGACCCATTGGCCCGGCCCACAATGAGAACCGTGGTCCAGATGTTGGTGGGAGAGGCGGGTGGGGGGAGGGGGGGAAG TGCGGGTGGTACCGACGGCGAGGCCAGCGATGAGTTTCAGCACTTCGCATTTGTTGATGAGCTTGCAGGACAGCGTGTCGGACTGTACCGCCGCCATGAT TAG
AA sequence Show only first row Show all	>Lus10026493 pacid=23164254 polypeptide=Lus10026493 locus=Lus10026493.g ID=Lus10026493.BGIv1.0 annot-version=v1.0 MLPSPPLIALSVFILSSLTTTFISAATEFDFGTLTLSSLKLIGDAHLNNGSVRLTRDLAVPNSGSGRALYSKPIRFRNPGTHSITSFSTFFSFTVTDLNP SSIGGGLAFLISPVPDAIGAAGGCLGLFSADGLAAGFVAVEFDTLMDVEFKDINGNHVGLDLNSMVSSQVGDLEAVDIDLKSGDLVNAWINYDGSTRVLN VSVSYSSQKPKEPILSASLDLDPYVNDFMYVGFSGSTQGSTEIHSVEWWSFSSLFDSTTPSGSNGSPSPVSAAVPPPPPGITLLNPTADSIKAAPPPSLP PTAIGSNQQKSSKSSSSCHNQLCKQGPGAVAGVATASAFLVIFAGVLIWIFSKRTKKVKRSSELFASEVIKMPKEFTYKELRSATNCFNSNRIIGHGAFG TVYKGIIPETGDIVAVKKCSHNGQGKNEFLSELSIIGTLRHRNLVRLIGWCHEKGEILLVYDLMPNGSLDKALFESRMILPWPHRRKVLNGVASALAYLH QECENQVIHRDIKSSNVMLDEGFNARLGDFGLARQVEHDKSPDATVAAGTMGYLAPEYLLTGRATEKTDVFSYGAVVLEVASGRRPIEKDAASTGGNLVE WVWTLHREGRLLTAADPRLEGEFEEGEMRRVLLVGLACSHPDPLARPTMRTVVQMLVGEAGGGRGGSAGGTDGEASDEFQHFAFVDELAGQRVGLYRRHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53380			Concanavalin A-like lectin pro...		Lus10026493 [exp]	0	1
AT3G53380			Concanavalin A-like lectin pro...		Lus10019923 [exp]	3.3	0.8983
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	6.7	0.8539
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10041881 [exp]	7.1	0.8604
AT3G51990			Protein kinase superfamily pro...		Lus10016371 [exp]	8.7	0.8335
AT1G23780			F-box family protein (.1)		Lus10033762 [exp]	13.3	0.8357
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Lus10034041 [exp]	15.2	0.8220
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	15.4	0.8644
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	19.6	0.8286
AT5G20120			unknown protein		Lus10043283 [exp]	20.5	0.8053
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	21.8	0.8388

Compare expression of checked genes

Lus10026493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.