Plant FIBer expression Database

Lus10026494 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019924
[exp]
164 / 1e-51 AT2G42760 56 / 7e-09 unknown protein
Lus10015228
[exp]
43 / 2e-05 AT2G42760 115 / 5e-31 unknown protein
Lus10005429
[exp]
43 / 2e-05 AT2G42760 111 / 1e-29 unknown protein
Lus10015227
[exp]
43 / 2e-05 AT2G42760 93 / 1e-22 unknown protein
Lus10007299
[exp]
39 / 0.0004 AT2G42760 115 / 7e-31 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G129800
[exp]
62 / 3e-12 AT2G42760 65 / 4e-12 unknown protein
Potri.004G059900
[exp]
41 / 6e-05 AT2G42760 99 / 6e-25 unknown protein
Potri.011G069900
[exp]
40 / 0.0001 AT2G42760 89 / 4e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10026494 pacid=23164324 polypeptide=Lus10026494 locus=Lus10026494.g ID=Lus10026494.BGIv1.0 annot-version=v1.0
ATGGCTCTTAGCGACAAAGGAGAAGGCGAAGAAAAAGAAGAGGAAGCTAGAAATATAATTAGACCAACAATAAGGGTGAGTCCAGTAACAGGTAGAAGCC
GGTCATATTCTTCATCTCCATTAACCAAGAAATGGCACCGCAGAAGACTGGGAAACAGTAGTACTATCAGTAATAGCAGCAGAGAACAAAAACAAGGGTC
GATGATGCACCCGTTCATGATATCCGAGAGAACGAGCAGTTGCAGGAGCTTAATAAGGGAGTTGGAAATGGAGGAAGTGAAAGGGTTCATGGATCTTGGT
TTCAGGTTCAAGGCAGAGAGCCTGAATCCCAGAATGATAAGCGTAGTCCCTGATCTCGGCCCAAGTTTAGAATCAAGCACCGGTTTGATGCCTACGTAA
AA sequence
>Lus10026494 pacid=23164324 polypeptide=Lus10026494 locus=Lus10026494.g ID=Lus10026494.BGIv1.0 annot-version=v1.0
MALSDKGEGEEKEEEARNIIRPTIRVSPVTGRSRSYSSSPLTKKWHRRRLGNSSTISNSSREQKQGSMMHPFMISERTSSCRSLIRELEMEEVKGFMDLG
FRFKAESLNPRMISVVPDLGPSLESSTGLMPT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10026494
[exp]
0 1
AT4G35020 ROP6, ARAC3, RH... RHO-RELATED PROTEIN FROM PLANT... Lus10039899
[exp]
1.4 0.9741
AT2G31110 TBL40 TRICHOME BIREFRINGENCE-LIKE 40... Lus10000466
[exp]
3.2 0.9592
AT2G38080 ATLMCO4, IRX12,... LACCASE 4, IRREGULAR XYLEM 12,... Lus10032894
[exp]
4.6 0.9456
AT2G38080 ATLMCO4, IRX12,... LACCASE 4, IRREGULAR XYLEM 12,... Lus10041481
[exp]
5.3 0.9572
AT1G18200 AtRABA6b RAB GTPase homolog A6B (.1) Lus10042009
[exp]
6.5 0.9574
AT5G01360 TBL3 TRICHOME BIREFRINGENCE-LIKE 3,... Lus10027813
[exp]
7.7 0.9557
AT3G46440 UXS5 UDP-XYL synthase 5 (.1.2) Lus10005900
[exp]
12.7 0.9512
AT1G71070 Core-2/I-branching beta-1,6-N-... Lus10033379
[exp]
12.8 0.9289
AT2G28760 UXS6 UDP-XYL synthase 6 (.1.2.3) Lus10001707
[exp]
13.4 0.9346
AT4G20050 QRT3 QUARTET 3, Pectin lyase-like s... Lus10038370
[exp]
14.1 0.9344

Lus10026494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.