Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09740 352 / 6e-123 ATSYP71, SYP71 syntaxin of plants 71 (.1) AT3G45280 286 / 6e-97 ATSYP72, SYP72 syntaxin of plants 72 (.1) AT3G61450 273 / 5e-92 ATSYP73, SYP73 syntaxin of plants 73 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019925 [exp] 486 / 2e-175 AT3G09740 419 / 2e-149 syntaxin of plants 71 (.1) Lus10023178 [exp] 409 / 3e-145 AT3G09740 416 / 1e-148 syntaxin of plants 71 (.1) Lus10015075 [exp] 393 / 3e-139 AT3G09740 417 / 3e-149 syntaxin of plants 71 (.1) Lus10036118 [exp] 304 / 9e-104 AT3G45280 363 / 3e-127 syntaxin of plants 72 (.1) Lus10036377 [exp] 295 / 3e-96 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10014759 [exp] 265 / 2e-84 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10007411 [exp] 49 / 2e-07 AT3G09740 65 / 1e-13 syntaxin of plants 71 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G088200 [exp] 372 / 1e-130 AT3G09740 384 / 3e-136 syntaxin of plants 71 (.1) Potri.006G129500 [exp] 369 / 1e-129 AT3G09740 377 / 3e-133 syntaxin of plants 71 (.1) Potri.014G087400 [exp] 302 / 2e-103 AT3G09740 352 / 2e-123 syntaxin of plants 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10026495 pacid=23164293 polypeptide=Lus10026495 locus=Lus10026495.g ID=Lus10026495.BGIv1.0 annot-version=v1.0 ATGACCGTGATCGACATTCTCACGAGAGTCGATGCGATCTGCCAGAAGTATGACAAATACGATGTCGAGAAGCAGAAGGATCTCAATGTCTCGGGGGACG ATGCCTTTGCTCGCGGCTACGCAGCTGTTGACGCCGAAATCGAAGCCGCTCTTGAGCGAGTCTCTGATCTGTCTGATCTGCAGAAAGCAGAACTTGCTTC CAAGGAGAAAAGTAAGGCATCAGCGGTAGCTCTTAATGCGGAGCTTCGTCGCACCAAGGCAAAGTTACTTGAGGAGGTCCCGAAGTTGCAGAGACTCGCG ATAAAGAAGGTAAAAGGCCTTTCAACTGAAGAGCTTACTGCCCGTAATGACTTGGTTCTTGCATTACCGGACAGAATTCAAGCTATTCCAGATGGAAATG CTGCTGCACCAAAACAAAATGGAGGTTGGGGCTCCTCTGCTTCCAGGGCAGAAATAAAATTTGATTCAGATAATCGGTTTGATGATGAATATTTTCAAGA ATCTGAGCAGTCCAGCAAGTTTAGGCAGGAATATGACACACGTAAACAAAAGCAGGATCAAGGTCTTGAGATGATTTCAGAAGGTTTAGACACTTTGAAA AACATGGCTCATGACATGAATGAGGAAATGGATAGGCAAGTTCCTCTGGCGGATGAAATTGATGCCAAGGTCGACAAGGCAGCTGCTGATCTTAAGAGCA CCAATGTCAGACTTAAGGACACTGTTATGCAGTTAAGATCCAGCAGAAATTTCTGCATCGATATTGTTCTGTTGTGCATAATCTTGAGCATTGCTGCTTA TTTGTACAATTTGTTTGGTAAGTTACCTGAACAGTGTGTGGATGGCTTTTGCAGTGTATTGAAGAAATGA
AA sequence Show only first row Show all	>Lus10026495 pacid=23164293 polypeptide=Lus10026495 locus=Lus10026495.g ID=Lus10026495.BGIv1.0 annot-version=v1.0 MTVIDILTRVDAICQKYDKYDVEKQKDLNVSGDDAFARGYAAVDAEIEAALERVSDLSDLQKAELASKEKSKASAVALNAELRRTKAKLLEEVPKLQRLA IKKVKGLSTEELTARNDLVLALPDRIQAIPDGNAAAPKQNGGWGSSASRAEIKFDSDNRFDDEYFQESEQSSKFRQEYDTRKQKQDQGLEMISEGLDTLK NMAHDMNEEMDRQVPLADEIDAKVDKAAADLKSTNVRLKDTVMQLRSSRNFCIDIVLLCIILSIAAYLYNLFGKLPEQCVDGFCSVLKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10026495 [exp]	0	1
AT1G80690			PPPDE putative thiol peptidase...		Lus10042454 [exp]	6.3	0.8669
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	6.6	0.8572
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10029129 [exp]	7.1	0.9001
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	7.3	0.8707
AT1G30630			Coatomer epsilon subunit (.1)		Lus10023385 [exp]	9.6	0.8430
AT2G32560			F-box family protein (.1)		Lus10036061 [exp]	10.4	0.8293
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10028658 [exp]	13.8	0.8476
AT1G16860			Ubiquitin-specific protease fa...		Lus10034825 [exp]	14.1	0.8612
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10000679 [exp]	15.0	0.8620
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10027420 [exp]	16.2	0.8396

Compare expression of checked genes

Lus10026495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.