Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03160 545 / 0 ATP58IPK homolog of mamallian P58IPK (.1) AT5G01390 81 / 4e-17 DNAJ heat shock family protein (.1.2.3.4) AT4G28480 81 / 6e-17 DNAJ heat shock family protein (.1.2) AT2G20560 81 / 2e-16 DNAJ heat shock family protein (.1) AT3G08910 80 / 2e-16 DNAJ heat shock family protein (.1) AT4G39960 75 / 2e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 75 / 3e-14 DNAJ heat shock family protein (.1) AT5G25530 73 / 5e-14 DNAJ heat shock family protein (.1) AT1G56300 70 / 5e-14 Chaperone DnaJ-domain superfamily protein (.1) AT1G10350 73 / 8e-14 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019928 [exp] 744 / 0 AT5G03160 637 / 0.0 homolog of mamallian P58IPK (.1) Lus10015078 [exp] 679 / 0 AT5G03160 638 / 0.0 homolog of mamallian P58IPK (.1) Lus10023181 [exp] 574 / 0 AT5G03160 507 / 2e-178 homolog of mamallian P58IPK (.1) Lus10017687 [exp] 82 / 5e-17 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 81 / 2e-16 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10041254 [exp] 80 / 3e-16 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10021961 [exp] 80 / 3e-16 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10005033 [exp] 79 / 9e-16 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 79 / 9e-16 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G088600 [exp] 620 / 0 AT5G03160 570 / 0.0 homolog of mamallian P58IPK (.1) Potri.007G136700 [exp] 84 / 1e-17 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 84 / 1e-17 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 82 / 8e-17 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 81 / 2e-16 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 79 / 5e-16 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 79 / 7e-16 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.010G113400 [exp] 76 / 1e-15 AT1G71000 148 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G073900 [exp] 79 / 2e-15 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 77 / 7e-15 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10026498 pacid=23164213 polypeptide=Lus10026498 locus=Lus10026498.g ID=Lus10026498.BGIv1.0 annot-version=v1.0 ATGGGTTCAGTTGCTACAGATACCAAAACTAAAAGTGCTGCGGAGTTGTTCGACAGAGTTTCTCAAAGTGTAAAAGTCAAGCGCTATAGTGATGCACTTG ATGATCTCAACTCTGCTATTGAGGCTGATCCATCGCTTTCAGAAGCATATCTTCGCCGTGCGTCCATTCTTCGTCAAATATGCAGATATGATGAGTCAGA AAAGAGCTATCAGAAGTTTCTGGAGCTGAAACCTAGACATGCAGGTGCAGAAAAGGAGCTTTCTCAGTCAAATCAAGCAAAGAGTGCTCTGGATACAGCT TTCACTCTTTTTAGCTCCGGGGATCACTCAAAAGCCTTGGAGTTTGTTGAAAAAGTTGTGCTTGTTTTCTCTCCAGCCTGCTCTAAGGCAAAAATACTCA AGGTGAGGTTACTGTTAGGTGTTAAAGACTTCTCTGCTGCCATCTCTGAAAGTGGACGTATTCTGAGGGATGATGAAAGTAATCTAGAGGCGCTCCTGCT CCGTGGCCGGGCCTACTACTATTTAGCAGACCACGATGTTGCCTCGAAGCATTATCAAAAAGGTCTTCGTCTTGATCCAGAGCATAGTGAACTCAAGAAA GCATTCTTTGGGTTGAAGAATTTACTCAAAAAGACCAAAAGTGTGAGTTCACCGACTTTGGAGTTTCCTTCTTTTTCCAGGCAATGCAATCTACTTCCTT TTCTAGAAAAAGCTGCTGAGGATAATGCAAACAGGGGTAAACTGCGAGTGGCAGTGGAGGACTACCGAGCAGCGCTAACCTTGGACCCTGACCATCTTGC ACATAATGTCCATCTTCATCTGGGTTTGTGCAAGGTCCTCGTTAAGCTTGGTCGGGGAAAAGATGCTTTAGCAAGTTGCAACGACGTTCTTAGTATAGAT GATGATCTTCTTGAAGCTTTAGTTCAGAGGGGTGAAGCTAAACTCCTAACAGAAGATTGGGAAGGAGCCGTTGAGGATCTGAAATCAGCTGCTCAACAAT CTCCCCAGGATATGGATATTCGCGAAGCCCTGATGCGGGCAGAGAAAGCTCTCAAGATGAGCAAGCGAAAAGATTGGTATAAGATTTTAGGCGTGTCGAG AACCGCTTCCATAGCTGAGATAAAGCGCGCCTACAAGAAACTTGCTTTGCAATGGCACCCTGATAAGAATGTTCAGAACCGAGAAGAAGCAGAGAACAAG TTCCGAGAAATAGCTGCAGCATACGAGGTCCTTGGAGATGATGAGAAGCGTGCAAGATTCGACAATGGAGAAGACCTTGAAGACATGGGGATGGGCGGTG GCGGTGGTAACCCTTATGGTGGTGGTGGTGGCCAGCATTTCTCGTTCCAGTTTGATGGAGGCTTTCCGGGCGGTTTTGGTGGGTTCGATGGAGGATTCCC TGGCGGCGATGGTGGTGGTTTTCAGTTTCAATTTTGA
AA sequence Show only first row Show all	>Lus10026498 pacid=23164213 polypeptide=Lus10026498 locus=Lus10026498.g ID=Lus10026498.BGIv1.0 annot-version=v1.0 MGSVATDTKTKSAAELFDRVSQSVKVKRYSDALDDLNSAIEADPSLSEAYLRRASILRQICRYDESEKSYQKFLELKPRHAGAEKELSQSNQAKSALDTA FTLFSSGDHSKALEFVEKVVLVFSPACSKAKILKVRLLLGVKDFSAAISESGRILRDDESNLEALLLRGRAYYYLADHDVASKHYQKGLRLDPEHSELKK AFFGLKNLLKKTKSVSSPTLEFPSFSRQCNLLPFLEKAAEDNANRGKLRVAVEDYRAALTLDPDHLAHNVHLHLGLCKVLVKLGRGKDALASCNDVLSID DDLLEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMDIREALMRAEKALKMSKRKDWYKILGVSRTASIAEIKRAYKKLALQWHPDKNVQNREEAENK FREIAAAYEVLGDDEKRARFDNGEDLEDMGMGGGGGNPYGGGGGQHFSFQFDGGFPGGFGGFDGGFPGGDGGGFQFQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10026498 [exp]	0	1
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10035685 [exp]	3.6	0.7438
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10003651 [exp]	7.5	0.7279
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10019928 [exp]	14.3	0.6528
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Lus10028032 [exp]	14.5	0.6596
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	46.8	0.6145
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10021491 [exp]	64.6	0.5987
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10016584 [exp]	81.2	0.6027
AT3G07470			Protein of unknown function, D...		Lus10004300 [exp]	83.0	0.5773
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	100.9	0.5686
AT5G38700			unknown protein		Lus10010019 [exp]	106.5	0.5720

Compare expression of checked genes

Lus10026498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.