Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03170 237 / 7e-79 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G60490 198 / 2e-63 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G44130 148 / 7e-44 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT1G03870 145 / 1e-42 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G20520 141 / 3e-41 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT2G04780 82 / 2e-18 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT2G45470 76 / 1e-15 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 75 / 3e-15 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G46550 74 / 6e-15 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT4G12730 66 / 2e-12 FLA2 FASCICLIN-like arabinogalactan 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019929 [exp] 335 / 3e-117 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 178 / 1e-55 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002978 [exp] 174 / 6e-54 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 169 / 2e-51 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036112 [exp] 159 / 8e-48 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10017696 [exp] 157 / 2e-47 AT2G20520 244 / 2e-81 FASCICLIN-like arabinogalactan 6 (.1) Lus10002985 [exp] 154 / 8e-46 AT5G60490 180 / 4e-56 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10033651 [exp] 153 / 8e-46 AT2G20520 234 / 2e-77 FASCICLIN-like arabinogalactan 6 (.1) Lus10002984 [exp] 152 / 5e-45 AT5G03170 192 / 1e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G088700 [exp] 259 / 1e-87 AT5G03170 203 / 2e-65 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.006G129200 [exp] 257 / 1e-86 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.015G129400 [exp] 192 / 4e-61 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G127900 [exp] 188 / 1e-59 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151432 [exp] 177 / 6e-55 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G014200 [exp] 175 / 4e-54 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151500 [exp] 174 / 8e-54 AT5G60490 167 / 4e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151300 [exp] 174 / 9e-54 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.013G151366 [exp] 174 / 9e-54 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G121200 [exp] 173 / 1e-53 AT5G03170 166 / 2e-50 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10026499 pacid=23164257 polypeptide=Lus10026499 locus=Lus10026499.g ID=Lus10026499.BGIv1.0 annot-version=v1.0 ATGAGGAGCCAACTTCAATCCCCATTCATGTTCTCGTTCTTCTTTTTCCTCCACAGCTCCATTTCGTATGCGCAATCCCCCGCGCCAGGCCCCTCTGGCC CGGCCAACATCACCGCTGTCTTAGAGAAGGCCGGCCAGTTCACGACCTTGATGAAGCTGATGAAGACCACCCAAGAAGCCGACCAGATCAACACTCAGCT CAACAGCAGCTCGAGCTCGGGCCTCACAATCTTCGCTCCTACTGACAACGCGTTCTCTAGCCTCAAAGCCGGAACTCTAAACTCCCTCTCGGATCAGCAG AAAGTGCAGCTGATCCAGTTCCATATCCTCCCGACTTTCGTCTCCATGTCCCAGTTCCAGACCGTGAGCAACCCTCTGAGGACCCAGGCTGGCGACAGCG CCAACGGGAAGTTCCCTCTCAATGTGACTACTTCGGGTACTCAAGTGAACGTCACGACCGGAGTCGATACCGCTAATGTCGACAACACATTGTACACTGA CGGCCAGCTCGTTGTTTACCAAGTGAGCAAGGTACTCTTGCCCTTGGATATCTTTGGTTCGTCGGCTGCACCAGCTCCGGCTCCGACCAAGGCCGGGAAG GCTCTAACTTCCAAGGCTCCCACGGCTGGGAATGCAGATGATTCCCCTGTCGATTCTTCCGGCGCAGAGGGAAGAGTTGTATCCCTTGGTTTGGTGGCTT TTGCTGCAGCTGTCCTTGTGTTATGA
AA sequence Show only first row Show all	>Lus10026499 pacid=23164257 polypeptide=Lus10026499 locus=Lus10026499.g ID=Lus10026499.BGIv1.0 annot-version=v1.0 MRSQLQSPFMFSFFFFLHSSISYAQSPAPGPSGPANITAVLEKAGQFTTLMKLMKTTQEADQINTQLNSSSSSGLTIFAPTDNAFSSLKAGTLNSLSDQQ KVQLIQFHILPTFVSMSQFQTVSNPLRTQAGDSANGKFPLNVTTSGTQVNVTTGVDTANVDNTLYTDGQLVVYQVSKVLLPLDIFGSSAAPAPAPTKAGK ALTSKAPTAGNADDSPVDSSGAEGRVVSLGLVAFAAAVLVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10026499 [exp]	0	1
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10019929 [exp]	1.0	0.9955
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10002559 [exp]	1.4	0.9827
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10009922 [exp]	3.9	0.9768
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002978 [exp]	4.2	0.9803
AT2G04850			Auxin-responsive family protei...		Lus10001736 [exp]	6.3	0.9792
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10034289 [exp]	6.9	0.9740
AT1G21510			unknown protein		Lus10028651 [exp]	7.3	0.9685
AT2G43630			unknown protein		Lus10002105 [exp]	7.5	0.9536
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10007294 [exp]	7.9	0.9450
AT5G61340			unknown protein		Lus10021641 [exp]	10.6	0.9704

Compare expression of checked genes

Lus10026499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.