Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53390 679 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37160 674 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 49 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 49 / 5e-06 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G52820 47 / 2e-05 WD-40 repeat family protein / notchless protein, putative (.1) AT5G14050 47 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 45 / 0.0001 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 44 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1) AT2G47410 44 / 0.0002 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT5G60940 44 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019930 [exp] 917 / 0 AT3G53390 794 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10000150 [exp] 488 / 1e-172 AT3G53390 434 / 3e-151 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 53 / 4e-07 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10026837 [exp] 53 / 5e-07 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020214 [exp] 53 / 6e-07 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 50 / 3e-06 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029493 [exp] 50 / 3e-06 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10008853 [exp] 50 / 5e-06 AT1G30460 563 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10023255 [exp] 48 / 1e-05 AT4G21130 517 / 0.0 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G088800 [exp] 711 / 0 AT3G53390 813 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G129100 [exp] 633 / 0 AT2G37160 811 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 51 / 1e-06 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.T125206 [exp] 51 / 2e-06 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G197900 [exp] 51 / 2e-06 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G111800 [exp] 50 / 3e-06 AT2G01470 346 / 7e-117 SEC12P-like 2 protein (.1) Potri.001G026800 [exp] 50 / 4e-06 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.009G058000 [exp] 50 / 4e-06 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.005G148500 [exp] 49 / 6e-06 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 48 / 2e-05 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10026500 pacid=23164255 polypeptide=Lus10026500 locus=Lus10026500.g ID=Lus10026500.BGIv1.0 annot-version=v1.0 ATGATCAACAGCAGTAACGGTATGATTTCGACGTCTTCGTCAGCCGCGGCAGCCAACGCACAATCGCCTGGATTGAAGACCTATTTCAAAACCCCGGAAG GGAGGTACAAGCTCCACTACGAGAAAACGCATCCTTCTGGTCTCCTTCACTACGCCCACGGCAAAACTGTCACTCAGGTAACTCTAGCTAACCTCAAAGA TAAACCAGCACCACAGACCCCAACTTCTTCGTCTTCAACCTTCAGTTCTAGCAGTGGAGTGCGATCAGCTGCAGCCAGATTGTTGGGTGCTGGCAATGGG GGTCGTGCACTGAGTTTCGTCGGAGGGAATGGTGGGAGTAAAAGCGTTAGTGGTGCCAGTAGGATTGGTTCCTTAGGGGTTTCAAGCTCAAGTAGTAGTG CTATGATAAATCCAAACTTTGACGGGAAAGGGAATTATCTGATCTTTAACGTTGGCGATGCTATTTTCATAAGCGATCTCAACTCTCAAGATAAGGATCC AATCAAATCCATCCATTTTAGTAATTCGAACCCCGTTTGTCATGCCTTTGATCCGGATGCTAGGGATGGACATGATTTGGTTATCGGTTTGAGTTCTGGT GATGTCTACTCGGTATCACTGAGACAACAATTGCAAGATGTTGGGAAGAAACTGGTTGGGGCTCAGCACCATAATAAAGATGGTTCTAACAAAGATGGTG CAGGAGATGCTTCGTTCCCAGTTGTCAAGGATCAGGCCCAGTTTTCTGTTTCACATGCACGTTACAGCAAGAGTAACCCTATTGCCCGATGGCACATTTG CCAAGGTTCAATTAATAGTATTACTTTCTCCGCTGACGGGACCTACTTAGCAACTGTTGGACGAGATGGATACCTTAGGGTTTTTGACTACACAAAGGAG CAACTTATTTGTGGTGGAAAGAGTTATTATGGAGCTCTACTATGTTGTGCTTGGAGCATGGATGGGAAATACATTTTGACTGGTGGCGAAGATGATCTCG TTCAAGTTTGGAGTATGGAAGACCGGAAAGTTGTCGCATGGGGTGAAGGACATAACTCGTGGGTGAGCGGAGTGGCGTTTGATTCATACTTTTCATCACC AAATGCAGATGGTACCACAGAGACAGTAATATACCGGTTTGGTTCTGTTGGCCAGATGACTTATGACTCTCCATCTCCGGATCCCATCAAATTAGTCAAT GGAACTCGCGACGCTCCCATAACTCCGTTTCTGGCTTCGTTTTGTGCACAGGATACGCAGTTGCTGCTGTGGGACTTGGAAATGGACGAAATCGTGGTGC CACTGCGTCGAGCCCCCGGCGGTTCCCCAACTTTTAGTGCTGGCAGTCAATCATCCCACTGGGACAATGTGATCCCAGTAGGCACTCTACAACCCGCTCC GTGCACTCGAGACGTTCCAAAACTCTCTCCCCTAGTCGTTCATCGCGTTCACACGGAGCCGCTTTCCGGGTTAATCTTCACTCAAGAATCCGTCGTTACA GCTTGTCGAGAAGGCCACATCAAAGTATGGATGAGACCTGGAGCTGTAGATAGCCAGAATACTACGGCGAACAACTCGGAGACCGTTTTGAGCGGCAGCT TGAAAGAGAAACCTTTGTTATCAAGCAAGAGTGGCACTGCTGGTTACAGGCAATGA
AA sequence Show only first row Show all	>Lus10026500 pacid=23164255 polypeptide=Lus10026500 locus=Lus10026500.g ID=Lus10026500.BGIv1.0 annot-version=v1.0 MINSSNGMISTSSSAAAANAQSPGLKTYFKTPEGRYKLHYEKTHPSGLLHYAHGKTVTQVTLANLKDKPAPQTPTSSSSTFSSSSGVRSAAARLLGAGNG GRALSFVGGNGGSKSVSGASRIGSLGVSSSSSSAMINPNFDGKGNYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDPDARDGHDLVIGLSSG DVYSVSLRQQLQDVGKKLVGAQHHNKDGSNKDGAGDASFPVVKDQAQFSVSHARYSKSNPIARWHICQGSINSITFSADGTYLATVGRDGYLRVFDYTKE QLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYFSSPNADGTTETVIYRFGSVGQMTYDSPSPDPIKLVN GTRDAPITPFLASFCAQDTQLLLWDLEMDEIVVPLRRAPGGSPTFSAGSQSSHWDNVIPVGTLQPAPCTRDVPKLSPLVVHRVHTEPLSGLIFTQESVVT ACREGHIKVWMRPGAVDSQNTTANNSETVLSGSLKEKPLLSSKSGTAGYRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53390			Transducin/WD40 repeat-like su...		Lus10026500 [exp]	0	1
AT1G68140			Protein of unknown function (D...		Lus10020957 [exp]	3.0	0.8257
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	4.0	0.8408
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10007370 [exp]	4.6	0.8561
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10033902 [exp]	7.5	0.7990
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028469 [exp]	7.7	0.8222
AT4G10265			Wound-responsive family protei...		Lus10039761 [exp]	9.0	0.7954
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021212 [exp]	13.4	0.7866
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10002217 [exp]	14.2	0.8097
AT4G10265			Wound-responsive family protei...		Lus10039754 [exp]	18.8	0.7841
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10003549 [exp]	18.9	0.7803

Compare expression of checked genes

Lus10026500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.