Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09760 407 / 1e-137 RING/U-box superfamily protein (.1) AT5G60580 393 / 7e-132 RING/U-box superfamily protein (.1.2.3.4) AT5G03180 365 / 2e-121 RING/U-box superfamily protein (.1.2) AT3G06330 189 / 2e-54 RING/U-box superfamily protein (.1.2.3) AT5G18760 170 / 2e-47 RING/U-box superfamily protein (.1) AT5G05830 63 / 3e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 62 / 8e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 58 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G34200 54 / 5e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G38070 54 / 6e-08 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019931 [exp] 781 / 0 AT3G09760 360 / 2e-119 RING/U-box superfamily protein (.1) Lus10037410 [exp] 406 / 2e-136 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10041301 [exp] 409 / 2e-129 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10022585 [exp] 384 / 2e-128 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10021482 [exp] 383 / 3e-128 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10012791 [exp] 225 / 2e-67 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 221 / 6e-63 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 180 / 9e-51 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10012793 [exp] 142 / 6e-39 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129000 [exp] 501 / 4e-174 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.009G013300 [exp] 411 / 1e-138 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.016G022900 [exp] 369 / 2e-122 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 362 / 6e-120 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.010G014800 [exp] 238 / 1e-72 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014950 [exp] 233 / 1e-70 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 196 / 7e-57 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.010G195100 [exp] 62 / 8e-11 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 60 / 5e-10 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 60 / 7e-10 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10026501 pacid=23164238 polypeptide=Lus10026501 locus=Lus10026501.g ID=Lus10026501.BGIv1.0 annot-version=v1.0 ATGGCAGCATCGGTTAATGGAGGAGAAGAACTCATGCCTAATAAGGATGCCGCCGCTAAACAGAGAGCTGCTGGCGGAATCCCAGTTGATTCCTCGCTTC AAAGAGTAACTAACTACTGCCTTTTCGATCTGTTCTTGTTCTTCAATTTTCACCTACCGGTTTCATTTCTTTGTGCTATGGCAGCAGCGACGATGGCAGG ACCCCCCAGCCACTCCTCCGGGTTTAAGAATGCGCTCGATCTCGAGGATGAGACTAGCGGGAACAGACAGGTCCCCGGAGGAGAAGACAAAATCGAACGA GTTATCCTCGAATTCGAGCTGGTAAATCGGAGTCCAACGCCGAAAAGAGTCAACTTTTCTCCTCTGCACAGTCCAGGTTTCGCCAGATTGAACGATTCTT CCCCTGATGCTTCCAAAACGAAATCTACTCGCAAGAATTTGCTTCCAAAGCTGAGCTTCAAGTACAGAAGAAGTACTGCAGATGTTGAAAGGGCCGCAAT TCTGGCACTTGGAGGTTCTCCAGATGCAGTCAGAGAGAGGTCTTTCTTCCGTAGAAACACGTCTTTCACTAAACTCTTCGGTCTCACGCCGAGGATTAAG AACACAGCATCGTCTCTGCCTGTTTCGCCTATTTCTCGCTCGAATCCTGAGTCCACCCATGGAGGGAATGCAATTGATCTACTCAGTTATGCTAAAGGAG AAGCGAAATTACCGATTCATCGTTCTCGTTCGGTTCCTGTTCTTAACAAAGATGTGAGCGTAAGGCAAATGGATTCAGCAGGTGGATTGTTTCGTGTTAT CCCGACCACTCCACGATCCACCGTCCCGGCTACATCAATGCCATCCCCTGCAGCTGATACTGATGAAAGTGATGACGGTGGCGAAGATATTCCGGAAGAG GAAGCTGTTTGCCGAATCTGCATGGTCGAGTTAGGCGAAGGTGCAGAAAGCCTCAAGATGGAATGCAGTTGTAAGGGCGAACTTGCTTTAGCCCACCAAG AATGTGCAGTGAAGTGGTTTAGCATCAAAGGTAACAAAATGTGTGATGTGTGTAAGCAAGAGGTCAAGAATTTACCAGTTACGCTCCTCCGAATTCAAAC TTCTCATAGCCATAGGAATGGAGCTCATAATCCTGAGATGGCTCAATACAGGCTAGACGTTCCAATTCTTGTTATAGTCAGCATGCTTGCTTTCTTCTGT TTCCTTGAGCAGCTTCTGGTGGGAAAACTCGGGTCCGGTGCAATCGCTATATCTCTTCCATTTTCCTGTATATTGGGTCTGCTGGCCTCCATGACTTCCA CAACAATGGTGAGAAGAAAATATGTCTGGGTTTACGCAACTGCACAATTCGCACTGGTTGTTCTCTCAGGTCATCTTTTCTACTCACTGCTTCATGTGCA GGCTGTCCTATCAGTTCTTCTAGCTACCTTCACTGGCTTTGGGGTGGCAATGTGTGCGAGTTCTTGTCTAATTGAGATTCTGAAATGGAGAAGACAGCGG CGATTTCAATCAAGCCAGCAGGGCGGAGCTGAGAATTCGGCGCAGGAAGTTACTACCGAAGTTCCACTCTCTGCAGTGACTAATCCTAGCCAACGAGAAG CTGCAGCAGGAGGTGCTGAAACTATGCCTCCTGTGTAG
AA sequence Show only first row Show all	>Lus10026501 pacid=23164238 polypeptide=Lus10026501 locus=Lus10026501.g ID=Lus10026501.BGIv1.0 annot-version=v1.0 MAASVNGGEELMPNKDAAAKQRAAGGIPVDSSLQRVTNYCLFDLFLFFNFHLPVSFLCAMAAATMAGPPSHSSGFKNALDLEDETSGNRQVPGGEDKIER VILEFELVNRSPTPKRVNFSPLHSPGFARLNDSSPDASKTKSTRKNLLPKLSFKYRRSTADVERAAILALGGSPDAVRERSFFRRNTSFTKLFGLTPRIK NTASSLPVSPISRSNPESTHGGNAIDLLSYAKGEAKLPIHRSRSVPVLNKDVSVRQMDSAGGLFRVIPTTPRSTVPATSMPSPAADTDESDDGGEDIPEE EAVCRICMVELGEGAESLKMECSCKGELALAHQECAVKWFSIKGNKMCDVCKQEVKNLPVTLLRIQTSHSHRNGAHNPEMAQYRLDVPILVIVSMLAFFC FLEQLLVGKLGSGAIAISLPFSCILGLLASMTSTTMVRRKYVWVYATAQFALVVLSGHLFYSLLHVQAVLSVLLATFTGFGVAMCASSCLIEILKWRRQR RFQSSQQGGAENSAQEVTTEVPLSAVTNPSQREAAAGGAETMPPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09760			RING/U-box superfamily protein...		Lus10026501 [exp]	0	1
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10041895 [exp]	2.8	0.9080
AT1G76360			Protein kinase superfamily pro...		Lus10013223 [exp]	3.3	0.9113
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	3.9	0.9049
					Lus10021100 [exp]	5.3	0.8959
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	8.5	0.8941
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	8.8	0.8767
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10014273 [exp]	9.8	0.8765
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10033387 [exp]	11.0	0.8438
AT3G09010			Protein kinase superfamily pro...		Lus10011193 [exp]	13.9	0.8653
AT5G65380			MATE efflux family protein (.1...		Lus10020952 [exp]	14.8	0.8226

Compare expression of checked genes

Lus10026501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.