Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53400 379 / 2e-128 unknown protein AT5G03190 342 / 3e-114 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3) AT5G01710 132 / 1e-33 methyltransferases (.1) AT1G58120 78 / 2e-15 unknown protein AT4G24805 70 / 2e-13 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G24480 66 / 7e-12 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G16030 42 / 0.0004 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019932 [exp] 823 / 0 AT3G53400 385 / 1e-130 unknown protein Lus10014232 [exp] 139 / 6e-36 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10012217 [exp] 137 / 3e-35 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10001267 [exp] 135 / 8e-35 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10022682 [exp] 117 / 3e-28 AT5G01710 698 / 0.0 methyltransferases (.1) Lus10026501 [exp] 84 / 4e-17 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10036941 [exp] 70 / 3e-13 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 68 / 1e-12 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 57 / 1e-08 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128800 [exp] 476 / 2e-166 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 459 / 8e-160 AT3G53400 420 / 6e-144 unknown protein Potri.006G105100 [exp] 132 / 2e-33 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.016G128100 [exp] 126 / 2e-31 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 102 / 2e-23 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.002G104500 [exp] 73 / 7e-14 AT1G58120 283 / 1e-91 unknown protein Potri.010G052100 [exp] 69 / 4e-13 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G088400 [exp] 63 / 7e-11 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G047700 [exp] 59 / 3e-09 AT1G58120 254 / 6e-81 unknown protein Potri.007G113200 [exp] 57 / 2e-08 AT1G58120 252 / 6e-80 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10026502 pacid=23164351 polypeptide=Lus10026502 locus=Lus10026502.g ID=Lus10026502.BGIv1.0 annot-version=v1.0 ATGGAATTGAAGGGCTTTAGATCCCAGGCCGTTACCGAATCGGTGGCCAAGCACCTCTTCCTGCGTTGCTTCGCGCTGGCTTTGATCCTCTCAACAATTC CCTTCCTCCAGTACTTATCTGGATCTGAATCTACACTCTTGGATCCCATTTGGGGCTCTCTCGAGTGCGAGGAAGGGGTCAATTTGACCGCCACTGTCAT CAGGGAGCTAACAAGCAAGCAACTTTTGGATCATAACGCTAAATCTCTCTGTGTCGGCGAAGGATCGGCCTCTGCCGTCTACGCATTGCGCGAATTAGGA TTCGCCAATGCCTCCAGTGCCGATAGGCACCCGTTCTTCTTCTTTCCCAAGAAGAAGAAGTACATTTACCAGCTCGAATTCGAGGATAACTCGTTCGATT TTGTCTTCTCCTCCGGGGACCTGTCTGTTCCCGCTAGTCTCATCCTCGAGATCGAGCGCATTCTTAAACCCGGAGGAGTGGCTGCTGCTCTTGTCGGCAG CTCGAACGGCGGTGATTTGATGATCCGTAACAACAACTTGGTTAGATCAGCAATGCCGATTTCCTCGCTGTTGAAGTCCTCCAACATTGTTCATGTTGGC TATCTCAACAATGGCGGCTACACTCTGGTTGTTTTCAAGAAGAGATTCTACTGTGCCGATTACTTCGAGCAAGTCAGCTTACCTTCCGAATGCCATTCCG TTTCGAACAATAACCCCTTCATCAGGTTGTTAGAGCCGGCTGTTCAGAGCAAACACGCTGGGTTTGAAGAAAAGATTGCATATTTGCCCAAGTTCATGGA AGTTTCTTCCAGGAACCGTATGGTATACGTAGATATTGGAGCCGGTGAGCATCTCAACTCGAATAATGTCGCATCATCTTGGTACTTGCCGCAATCTTAT CCTATCGATCACAAGGCTTTCAACGTCTACATGGTTGATCACAACACCTCGGTGTTACATTCCTTCGTGAAGAGACCCGGTGTTACTTTCATATATCATC CCGGCCTAGCCGACGATGATAATGCTGTCCGAGACCTCGACATCGAGGATTTGGATCCATTCGTGGAGGATCAGGGGTTCGATTTCCTCGCTTGGTTCAA GGAAACCGTGAGGTATGCAGATTTCGTGGTGATGAGGATGAATGCCGGTGAGGCTGAACTGAAGTTTCTGGTTGATCTGTTTAGTACCGGTACGATTTGC TCGGTAGACGAGTTGTTCCTTAATTGCTCGGGGAAAGGTTTGGCTAATGGTGCGGAATGTGTGGGGCTGGTTAAGAGCCTTCGTGCTGCTGGGGTGTTCG TGCATCAGTGGTGGGGAGACTAG
AA sequence Show only first row Show all	>Lus10026502 pacid=23164351 polypeptide=Lus10026502 locus=Lus10026502.g ID=Lus10026502.BGIv1.0 annot-version=v1.0 MELKGFRSQAVTESVAKHLFLRCFALALILSTIPFLQYLSGSESTLLDPIWGSLECEEGVNLTATVIRELTSKQLLDHNAKSLCVGEGSASAVYALRELG FANASSADRHPFFFFPKKKKYIYQLEFEDNSFDFVFSSGDLSVPASLILEIERILKPGGVAAALVGSSNGGDLMIRNNNLVRSAMPISSLLKSSNIVHVG YLNNGGYTLVVFKKRFYCADYFEQVSLPSECHSVSNNNPFIRLLEPAVQSKHAGFEEKIAYLPKFMEVSSRNRMVYVDIGAGEHLNSNNVASSWYLPQSY PIDHKAFNVYMVDHNTSVLHSFVKRPGVTFIYHPGLADDDNAVRDLDIEDLDPFVEDQGFDFLAWFKETVRYADFVVMRMNAGEAELKFLVDLFSTGTIC SVDELFLNCSGKGLANGAECVGLVKSLRAAGVFVHQWWGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53400			unknown protein		Lus10026502 [exp]	0	1
AT3G53400			unknown protein		Lus10019932 [exp]	1.0	0.9845
AT3G47250			Plant protein of unknown funct...		Lus10020563 [exp]	4.6	0.9668
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	5.8	0.9702
AT3G26590			MATE efflux family protein (.1...		Lus10036851 [exp]	6.3	0.9550
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	7.5	0.9538
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	7.7	0.9636
AT5G42655			Disease resistance-responsive ...		Lus10032310 [exp]	10.1	0.9610
AT1G48960			Adenine nucleotide alpha hydro...		Lus10027236 [exp]	10.2	0.9512
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	11.5	0.9512
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	12.7	0.9570

Compare expression of checked genes

Lus10026502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.