Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37180 75 / 9e-18 PIP2C, PIP2;3, RD28 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) AT2G37170 74 / 2e-17 PIP2;2, PIP2B PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) AT3G53420 70 / 7e-16 PIP2;1, PIP2A PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) AT5G60660 63 / 3e-13 PIP2F, PIP2;4 plasma membrane intrinsic protein 2;4 (.1) AT3G54820 62 / 4e-13 PIP2D, PIP2;5 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) AT2G16850 61 / 1e-12 PIP3B, PIP2;8 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) AT4G35100 59 / 4e-12 SIMIP, PIP3A, PIP2;7, PIP3 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) AT4G00430 55 / 1e-10 PIP1;4, TMP-C, PIP1E TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) AT2G45960 52 / 3e-09 PIP1;2, ATHH2, TMP-A, PIP1B TRANSMEMBRANE PROTEIN A, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, plasma membrane intrinsic protein 1B (.1.2.3) AT2G39010 52 / 3e-09 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019934 [exp] 105 / 3e-29 AT2G37170 474 / 6e-171 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10023184 [exp] 84 / 6e-21 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Lus10022577 [exp] 72 / 3e-17 AT4G00430 248 / 3e-83 TRANSMEMBRANE PROTEIN C, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, plasma membrane intrinsic protein 1;4 (.1.2) Lus10023515 [exp] 72 / 9e-17 AT3G54820 482 / 5e-174 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10040399 [exp] 72 / 1e-16 AT3G54820 474 / 1e-170 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Lus10021475 [exp] 65 / 3e-14 AT2G39010 265 / 4e-89 PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, plasma membrane intrinsic protein 2E (.1) Lus10041397 [exp] 63 / 2e-13 AT3G53420 412 / 6e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Lus10027467 [exp] 61 / 9e-13 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Lus10039222 [exp] 61 / 9e-13 AT2G16850 518 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128000 [exp] 86 / 4e-22 AT2G37170 487 / 5e-176 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.006G128200 [exp] 85 / 1e-21 AT2G37170 490 / 3e-177 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.016G089500 [exp] 83 / 5e-21 AT2G37180 458 / 1e-164 RESPONSIVE TO DESICCATION 28, PLASMA MEMBRANE INTRINSIC PROTEIN 2C, PLASMA MEMBRANE INTRINSIC PROTEIN 2;3, Aquaporin-like superfamily protein (.1) Potri.008G039600 [exp] 77 / 9e-19 AT3G53420 445 / 1e-159 PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, plasma membrane intrinsic protein 2A (.1.2) Potri.010G222700 [exp] 77 / 1e-18 AT3G54820 484 / 6e-175 PLASMA MEMBRANE INTRINSIC PROTEIN 2D, plasma membrane intrinsic protein 2;5 (.1) Potri.009G013900 [exp] 72 / 8e-17 AT2G37170 458 / 8e-165 PLASMA MEMBRANE INTRINSIC PROTEIN 2;2, plasma membrane intrinsic protein 2 (.1) Potri.005G109300 [exp] 64 / 7e-14 AT2G16850 413 / 4e-147 PLASMA MEMBRANE INTRINSIC PROTEIN 3B, plasma membrane intrinsic protein 2;8 (.1) Potri.005G109200 [exp] 64 / 1e-13 AT4G35100 352 / 9e-123 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.004G176300 [exp] 58 / 1e-11 AT4G35100 513 / 0.0 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2) Potri.009G136600 [exp] 57 / 2e-11 AT4G35100 493 / 1e-178 PLASMA MEMBRANE INTRINSIC PROTEIN 3A, PLASMA MEMBRANE INTRINSIC PROTEIN 2;7, plasma membrane intrinsic protein 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026505 pacid=23164360 polypeptide=Lus10026505 locus=Lus10026505.g ID=Lus10026505.BGIv1.0 annot-version=v1.0 ATGGCGAAGGACGTTGAAGGAGGACACGTGGCGGCAGAGTACCAAGCCAAGGACTACCACGATCCACCGCCGGCCCCACTGATCGACGCGGAGGAGCTTA CCCAATGGTCCCTCTACAGAGCCGTGATTGCCGAGTTCATCGCCCGCCGAGTTCGTAGCAACTCTCCTCTTCCTCTACATCACCGTCCTCACCGTCATCG GCTACAAGAGCCAGGTCGACAACGCTGA
AA sequence Show only first row Show all	>Lus10026505 pacid=23164360 polypeptide=Lus10026505 locus=Lus10026505.g ID=Lus10026505.BGIv1.0 annot-version=v1.0 MAKDVEGGHVAAEYQAKDYHDPPPAPLIDAEELTQWSLYRAVIAEFIARRVRSNSPLPLHHRPHRHRLQEPGRQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37180		PIP2C, PIP2;3, ...	RESPONSIVE TO DESICCATION 28, ...		Lus10026505 [exp]	0	1
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10026504 [exp]	1.0	0.9590
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10019934 [exp]	3.2	0.8213
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	5.7	0.7831
AT5G43180			Protein of unknown function, D...		Lus10025217 [exp]	7.5	0.7639
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10005652 [exp]	7.9	0.7322
AT3G14280			unknown protein		Lus10037453 [exp]	23.0	0.7544
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	24.9	0.7472
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10015083 [exp]	27.0	0.7343
AT5G62580			ARM repeat superfamily protein...		Lus10033129 [exp]	27.7	0.6767
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10015786 [exp]	31.1	0.7334

Compare expression of checked genes

Lus10026505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.