Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03230 95 / 2e-23 Protein of unknown function, DUF584 (.1) AT5G60680 83 / 3e-19 Protein of unknown function, DUF584 (.1) AT2G28400 83 / 4e-19 Protein of unknown function, DUF584 (.1) AT3G45210 77 / 3e-17 Protein of unknown function, DUF584 (.1) AT1G11700 66 / 9e-13 Protein of unknown function, DUF584 (.1) AT1G61930 64 / 4e-12 Protein of unknown function, DUF584 (.1) AT4G04630 63 / 9e-12 Protein of unknown function, DUF584 (.1) AT4G21970 57 / 6e-10 Protein of unknown function, DUF584 (.1) AT4G21930 56 / 4e-09 Protein of unknown function, DUF584 (.1) AT3G15040 56 / 9e-09 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019936 [exp] 277 / 2e-94 AT5G03230 99 / 1e-26 Protein of unknown function, DUF584 (.1) Lus10015087 [exp] 157 / 1e-47 AT5G03230 87 / 6e-22 Protein of unknown function, DUF584 (.1) Lus10041309 [exp] 98 / 1e-24 AT5G60680 137 / 5e-42 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 94 / 6e-23 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10000724 [exp] 75 / 5e-16 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 72 / 1e-15 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 71 / 1e-14 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 71 / 5e-14 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1) Lus10006781 [exp] 62 / 2e-11 AT4G21970 128 / 6e-38 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G089900 [exp] 123 / 2e-34 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 114 / 6e-31 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 88 / 7e-21 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 79 / 2e-17 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 71 / 2e-14 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 70 / 5e-14 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 67 / 5e-13 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 66 / 1e-12 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 61 / 1e-10 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.011G076900 [exp] 45 / 6e-06 AT1G29640 90 / 4e-24 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10026507 pacid=23164395 polypeptide=Lus10026507 locus=Lus10026507.g ID=Lus10026507.BGIv1.0 annot-version=v1.0 ATGGCTAGGTCAGGGGATTTATTCCGCGCCAACATTTTCTCCGCCGGCACCGAGGCAGGGAATCCGGACAGAGTTTTTGAATTTGACGAGTCCGACGTCG TCTGGAGCGGCGACTCCGCCAATAATTACCGGTCCAAGTCCAAGGCCAATAGGAGATCGCCAGCCGCCGGGCTAAGATCAGCAGCGATGGCGACGAGCAT TCCGCAGGTGCCGACGAGCGCGTCGCTTCCGGTGAACATACCGGACTGGTCCAAGATTTACAAAGAGGATAGGTACGGGGAGCAGCGAAGGCGGAGGACT GATATCAGTTTGAGCGAGTTAGGCGATCATCTTGAAGACGACAGCGATTGCGAGGAGGAGTGGTCCGGCGGCGGCGGAGATTGGGAGGACAGAGTTCCGC CGCATGAGTATTTGGCGCGGCGGAGAGGAGCGTCGCTGTCGGTTCACGAAGGCGTAGGGAGGACTCTGAAAGGGAGGGATTTACGGCAGGTGAGGAATGC GATTTGGAAGAAAGTCGGCGAATGGTGGTGGGGGAATTTGCAACGCACAGATCGAAATGTTGCGTTTGGACTTGTGTGTTGGTTGTTGTCGAAGGCTTGT AATCAGAGAGTCTTCAATGGTGAGAACATCTCGAAGGAAGGATTAAAAGCACATCTAGCTTGCTGGCAGAGCACTTTGATACAGTGTGAAGCTGAGGCGA ATGCTATTTCGTCAATCTGTATCATCGGTCAGAGTGATCAGGAAATTGCTTGGGAGTCAGACCAGCCACCTTGGCTCACTCTCAACGTTGATGGTTCGGT TGCTAAAGAAGGTGGTGCTACTGCGGGAGGAGCCTTTAGATCGTCACCGGGTGTTTGTTGTTTGGCCTTTACAGCCAATTTCGGGCGTTGTCTTAAAAAT GTGTGGCGAGTTGAGAGGCCTCGTCGAGGGTCTTAA
AA sequence Show only first row Show all	>Lus10026507 pacid=23164395 polypeptide=Lus10026507 locus=Lus10026507.g ID=Lus10026507.BGIv1.0 annot-version=v1.0 MARSGDLFRANIFSAGTEAGNPDRVFEFDESDVVWSGDSANNYRSKSKANRRSPAAGLRSAAMATSIPQVPTSASLPVNIPDWSKIYKEDRYGEQRRRRT DISLSELGDHLEDDSDCEEEWSGGGGDWEDRVPPHEYLARRRGASLSVHEGVGRTLKGRDLRQVRNAIWKKVGEWWWGNLQRTDRNVAFGLVCWLLSKAC NQRVFNGENISKEGLKAHLACWQSTLIQCEAEANAISSICIIGQSDQEIAWESDQPPWLTLNVDGSVAKEGGATAGGAFRSSPGVCCLAFTANFGRCLKN VWRVERPRRGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03230			Protein of unknown function, D...		Lus10026507 [exp]	0	1
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10040215 [exp]	5.1	0.8613
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10022742 [exp]	5.1	0.8178
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10028970 [exp]	8.8	0.8637
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10028275 [exp]	11.3	0.8447
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10017554 [exp]	15.7	0.8606
AT4G29780			unknown protein		Lus10011946 [exp]	18.0	0.8593
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10032372 [exp]	20.7	0.8481
AT3G11760			unknown protein		Lus10021254 [exp]	21.6	0.8441
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	23.1	0.8473
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	28.1	0.8467

Compare expression of checked genes

Lus10026507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.