Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30080 658 / 0 ARF ARF16 auxin response factor 16 (.1) AT2G28350 639 / 0 ARF ARF10 auxin response factor 10 (.1) AT1G77850 354 / 1e-113 ARF ARF17 auxin response factor 17 (.1) AT1G19850 250 / 7e-72 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G59750 245 / 8e-72 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G37020 245 / 7e-71 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT5G60450 239 / 2e-68 ARF ARF4 auxin response factor 4 (.1) AT5G62000 234 / 2e-66 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT2G33860 228 / 5e-66 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT2G46530 221 / 2e-63 ARF ARF11 auxin response factor 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019940 [exp] 1200 / 0 AT4G30080 660 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 592 / 0 AT4G30080 625 / 0.0 auxin response factor 16 (.1) Lus10023519 [exp] 585 / 0 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10021467 [exp] 556 / 0 AT4G30080 588 / 0.0 auxin response factor 16 (.1) Lus10024754 [exp] 369 / 3e-119 AT1G77850 505 / 1e-173 auxin response factor 17 (.1) Lus10024753 [exp] 364 / 1e-117 AT1G77850 494 / 2e-169 auxin response factor 17 (.1) Lus10009770 [exp] 357 / 8e-115 AT1G77850 496 / 4e-170 auxin response factor 17 (.1) Lus10016091 [exp] 284 / 2e-90 AT4G30080 315 / 7e-103 auxin response factor 16 (.1) Lus10016090 [exp] 248 / 7e-76 AT2G28350 266 / 3e-83 auxin response factor 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G127500 [exp] 834 / 0 AT4G30080 677 / 0.0 auxin response factor 16 (.1) Potri.016G090300 [exp] 803 / 0 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.008G039000 [exp] 780 / 0 AT4G30080 749 / 0.0 auxin response factor 16 (.1) Potri.010G223200 [exp] 777 / 0 AT4G30080 777 / 0.0 auxin response factor 16 (.1) Potri.004G211700 [exp] 725 / 0 AT2G28350 777 / 0.0 auxin response factor 10 (.1) Potri.009G014800 [exp] 703 / 0 AT2G28350 706 / 0.0 auxin response factor 10 (.1) Potri.002G089900 [exp] 386 / 5e-126 AT1G77850 520 / 2e-179 auxin response factor 17 (.1) Potri.005G171300 [exp] 367 / 7e-119 AT1G77850 534 / 0.0 auxin response factor 17 (.1) Potri.003G142100 [exp] 263 / 6e-78 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.004G228800 [exp] 251 / 5e-74 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10026510 pacid=23164411 polypeptide=Lus10026510 locus=Lus10026510.g ID=Lus10026510.BGIv1.0 annot-version=v1.0 ATGATTACGTTTATGGAAGCTAAAGACAAACTGAAAGAGGTGGACAAATGTCTGGACTCGCAGCTCTGGCACGCCTGCGCCGGCGGTATGGTCCAGATGC CGCAGGTGAACTCCAGGGTGTTTTACTTCCCTCAGGGACACGCCGAGCATTCCACCGGCCCCGTCAATTTCAGAACCACCCTCCCTAATCTCCGCCCTTA CATCCTCTCCAGAATCTCCGCAATCAAGTTCATGGCTGATCCGGAGACCGACGAGGTCTACGCCAAGATGAAGCTAGCTCCGGTCACTTCCTCCGGCGAC GGCTCTGATTTCGACGATGACCAGGGATTGATGAACGGAGAAGGACCGGAGAACAACAACAAGCAAGCGCCGACTTCATTCGCCAAGACACTGACGCAGT CAGACGCTAACAACGGCGGTGGATTCTCAGTCCCTCGGTACTGCGCCGAAACCATCTTCCCAAAGCTGGATTACACTGCGGATCCTCCAGTGCAAACCAT TCTTGCCAAGGATGTTCATGGGGAGACATGGAAGTTTCGGCACATTTACAGAGGCACACCGAGAAGGCATCTTTTGACTACCGGGTGGAGTGCATTTGTG AATCATAAGAAACTCGTTGCTGGGGATTCGATTGTGTTTCTTAGAGCCGAGAATGGAGATCTGTGCGTTGGGATTCGGAGAGCTAAGAGAGGAATCGGTG GTGGACCTGAGTCTTCTTGGAACCCTGCTGGTGGGAATAACTATGGTGGGTTTAGTTCATTTTTGAGGGAGGAAGAGAATAAACTCTCAAGGAATGGCAA TAATGGCAATAGCGGGAATGGAAATTTGATGGGTAGAGGGAAAGTGAGGCCTGATTCCGTGATTGAAGCTGCAACTCGAGCTGAAAATGGGCAGCCTTTT GAAGTTGTCTACTATCCTAGAGCTAGTGCTCCAGAGTTTTGTGTTAAGGCTTCTTTGGTGAAATCAGCATTGCAGATCCGTTGGTGTTCTGGGATGAGAT TCAAGATGGCTTTCGAGACTGAGGATTCTTCGAGGATCAGCTGGTTCATGGGTACCATCTCCTCCGTTCATTTCGCCGACCCTCTTCACTGGCCCGATTC CCCTTGGAGGCTTCTGCAGGTGGCATGGGACGAACCAGACTTGCTGCAGAATGTGAAGAGGGTAAGCCCATGGCTAGTGGAATTGGTATCAAACATGCCG GCGATTCATCTCTCGCCATTCTCACCGCCGAGGAAGAAATTGAGATTGCCGCACCATCCAGATTTCCCATTGGATGGGCAGTTTCCGATGCCGATGTTCA CCGGAAATCTCATTGGACATCATCACAGCAGCCCCTTTGGCTGCCTACCGGACCACAACACTACTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCA TTATGGTCTACCTTTATCAGATCTCCAACACTTCAACAATAAGATCCAGACGACGGGTCATCTATTCCCGCCTTTAGTTCAACGACAGCAGCATATGATC GTTCCGAAGCCGAGCATGAGTAGTGAAAGCATTTCATGCTTGCTGACGATGGGGAACTCTACTAACCAGTCGACTACTCCAAAGTTCAAACCAAATGAAG CAAAGGCAGTGCACCAATTCGTACTGTTTGGTAAACCGATTCTAACCGAGCAGCAGATCTCTCTTAGCGGCTCTGGCGATACAGCTTCTCCGAATTACAA ACGAAACAATTCATCCGATGGTCCAGAGCCATCTCCAGCGCGTGAAGGCTCTAATCATCTGGAAACTGAGCCAGCTTCCCATCAGTGCAGAGTCTTTTTC GAATCTGACGAGGTGGGTCGCCCTATTGATCTTTCGTCGATGAGATCTTACGACGAACTCCACAGAAAGATAGCAGAGATGTTCCAAGTGGAAAATCCAG AGACCCTAAGCAACATTCTGTACCGGGATTTAGTCGGTATAGTGAGGCACATTGGAGATGAGCCATACAGTGAGTTTGCGAGAAATGCGAGGAGGTTGAC GATCTTGACGGACTCGAGCAGTGACAATGTAGGAAGGACGAGGCAAAAGAAGTAA
AA sequence Show only first row Show all	>Lus10026510 pacid=23164411 polypeptide=Lus10026510 locus=Lus10026510.g ID=Lus10026510.BGIv1.0 annot-version=v1.0 MITFMEAKDKLKEVDKCLDSQLWHACAGGMVQMPQVNSRVFYFPQGHAEHSTGPVNFRTTLPNLRPYILSRISAIKFMADPETDEVYAKMKLAPVTSSGD GSDFDDDQGLMNGEGPENNNKQAPTSFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYTADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSAFV NHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPESSWNPAGGNNYGGFSSFLREEENKLSRNGNNGNSGNGNLMGRGKVRPDSVIEAATRAENGQPF EVVYYPRASAPEFCVKASLVKSALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVHFADPLHWPDSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNMP AIHLSPFSPPRKKLRLPHHPDFPLDGQFPMPMFTGNLIGHHHSSPFGCLPDHNTTTPAGMQGARHAHYGLPLSDLQHFNNKIQTTGHLFPPLVQRQQHMI VPKPSMSSESISCLLTMGNSTNQSTTPKFKPNEAKAVHQFVLFGKPILTEQQISLSGSGDTASPNYKRNNSSDGPEPSPAREGSNHLETEPASHQCRVFF ESDEVGRPIDLSSMRSYDELHRKIAEMFQVENPETLSNILYRDLVGIVRHIGDEPYSEFARNARRLTILTDSSSDNVGRTRQKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10026510 [exp]	0	1
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10040683 [exp]	1.0	0.8878
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004597 [exp]	2.0	0.8704
AT5G57710			Double Clp-N motif-containing ...		Lus10019984 [exp]	2.0	0.8531
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10009921 [exp]	4.9	0.8486
					Lus10007724 [exp]	6.6	0.7941
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004550 [exp]	9.4	0.8258
AT2G16980			Major facilitator superfamily ...		Lus10023994 [exp]	11.0	0.8501
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10020044 [exp]	11.4	0.8217
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	12.0	0.8542
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	16.1	0.8486

Compare expression of checked genes

Lus10026510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.