Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03250 612 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 515 / 1e-175 Phototropic-responsive NPH3 family protein (.1) AT5G13600 509 / 2e-174 Phototropic-responsive NPH3 family protein (.1) AT3G44820 377 / 3e-122 Phototropic-responsive NPH3 family protein (.1) AT5G66560 356 / 6e-114 Phototropic-responsive NPH3 family protein (.1) AT5G48800 335 / 1e-106 Phototropic-responsive NPH3 family protein (.1) AT3G50840 317 / 4e-100 Phototropic-responsive NPH3 family protein (.1) AT5G67385 303 / 3e-94 Phototropic-responsive NPH3 family protein (.1) AT1G03010 299 / 1e-92 Phototropic-responsive NPH3 family protein (.1) AT2G47860 298 / 4e-92 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013799 [exp] 1103 / 0 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 572 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 567 / 0 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 564 / 0 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 558 / 0 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 512 / 8e-175 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 512 / 8e-175 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 377 / 3e-122 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 375 / 1e-121 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G090400 [exp] 703 / 0 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 622 / 0 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 581 / 0 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 519 / 1e-177 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 517 / 6e-177 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 397 / 2e-130 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 384 / 2e-125 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 378 / 1e-122 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 373 / 2e-120 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 363 / 2e-116 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10026511 pacid=23164391 polypeptide=Lus10026511 locus=Lus10026511.g ID=Lus10026511.BGIv1.0 annot-version=v1.0 ATGGCGTTTCTCAGATTAGGTTCCAAATCTGAATTCCATCGCCAAGGCCTCAATTGGTTTTGCAACAATGGGCTCCCCAGTGATGTCGCCATTGAGGTCG GAGAAATGCGTTTCAATCTTCACAAGTTTCCGTTGTCTTCCAGAAGCGGCCTGTTAAGGAACCTAATCGAACAGCTTCCTCCGGAGGACGGATCCGTTTG TTCACTAAAGCTCCAAGATCTTCCGGGCGGTGCCAAGGCGTTCGAGCTCGCAGCCAAATTCTGCTACGGTGTTAAGTTTGATCTCACGGCTTCTAACGTC GTTAGCCTGAGATGTGCGGCGGAGTACCTCCGGATGTCTGAAGATTTCGGGGAAAAGAATATGATCTTACAAACTGAGAATTTCCTGAAAGATGTCTTCA CCGATTGGAAGGATTCGGTCACGGCTCTGAAATCCTGTCAGGAAATTCTCCTTCCTGCCGAAGATCTCCGCATTGTCTCCAGGTGCATCCTTTCGCTAGC TGCAAAAGCCTGTTCTGACCCTAACTCGAACCACTCATCACCACCTCCGAAGGAGAACGTTTTCGCTTGGAATGGGATTTCGAGATCTGCGAAATTGATA AGCATAGGCGAGGATTGGTGGTTCGAAGACGTCTCGTTTCTCAATTTACATCTATACAAGAGACTAATTCTAGCGGTGGAAGCGAAAGGGATGAAACCGG AGACAATTTCGGCTTCGGTTATGTATTATTCTAAGAGGTATTTGCCACTTATGACTAAGCAGAAAAAACAGCCAGGTGCTACCCCGGTCGCCGCGAATAA TCCGCTTCTTTCAGAAGCGGACCAACGACTTTACTTGGAAGAAGTTGTCACATTGTTGCCTACTCAAAAAGGAGTGACTCTGACCAGTTTCCTTCTTTCC CTTCTTCGCACCGCAATTTTTCTCAAGGCGAGCTCGTATTGTAAGGAGAATTTGGAGAGGAGAGCCGGAGCTCAACTCGATCAGGCAGCATTGCAGGATC TTCTGATACCGAACATGGGATATTCGGTTGAGACGGTTTACGATATTGATTGTGTTCAACGGATTGTCGATTACTTCATGTTGAATTCGCCGGAGGGGAA TTCAACATCGCCGCCTTATGATAACGCAATCGAAGAAGCGCAACAGTTTCTAGCCGAGAGCGAGTCGTCGTTAACTTCGATGACCATAGTGGCTAGTCTC GTCGACGGATTCCTTTCCGAAGTTGCTCCGGACGTGAACCTGAAGCTGCAGAAATTCGAAACACTTGCCGCCACGATCCCGGACTACGCTAGACCCATCG ACGACGGGCTTTACCATGCCATCGATGTCTACTTGAAGGCGCATCTGTGGTTAACCGAATCGGAAAAGGAGCAGCTTTGTAGGTTGATGAATTGCCAGAA GTTGTCGCTAGAAGCCAGCACTCACGCTGCTCAGAACGAGCGTTTGCCTCTTCGTTTGATCATTCAGGTCTTGTTCTTCGAACAGATTCGGCTCAGGACA ACGGTTTCGAGTTGGTTTTTCCTGACCGACAATCTGGACAACTCTCAACAAATTACCAGCAACAACAACAATAGTAACGACATCGATCAGCTTCAGCTTT TGAAAAACGAGGAATCATGTCAGGTAGAGCACGAGATCCGAGCAGCTGAAAATGATGATGTGCACGAAGCTGCCATGAAGGCGAGGGTTTCGGAGCTCGA AAAGGAGTGCCAGGAAATGAAAGAGGACATCGAGAAGCTCGTAGTCAAGACGAAAAAAAGTTGGAGGATTTTTTCGAAAAACTCTCGTTTGAAGCAGAAG TTGCAGTCCTGCAATTCCGAGAAATCCTGTGATTTCAAGGAACCTGAACCTCTCCCGATATCAAATTCTGTTACTACTGAACCGCAACAAAATCCTGAGA CGTCAGAGGTTGCACCTCAGAATTTCAGGTTCCATTGA
AA sequence Show only first row Show all	>Lus10026511 pacid=23164391 polypeptide=Lus10026511 locus=Lus10026511.g ID=Lus10026511.BGIv1.0 annot-version=v1.0 MAFLRLGSKSEFHRQGLNWFCNNGLPSDVAIEVGEMRFNLHKFPLSSRSGLLRNLIEQLPPEDGSVCSLKLQDLPGGAKAFELAAKFCYGVKFDLTASNV VSLRCAAEYLRMSEDFGEKNMILQTENFLKDVFTDWKDSVTALKSCQEILLPAEDLRIVSRCILSLAAKACSDPNSNHSSPPPKENVFAWNGISRSAKLI SIGEDWWFEDVSFLNLHLYKRLILAVEAKGMKPETISASVMYYSKRYLPLMTKQKKQPGATPVAANNPLLSEADQRLYLEEVVTLLPTQKGVTLTSFLLS LLRTAIFLKASSYCKENLERRAGAQLDQAALQDLLIPNMGYSVETVYDIDCVQRIVDYFMLNSPEGNSTSPPYDNAIEEAQQFLAESESSLTSMTIVASL VDGFLSEVAPDVNLKLQKFETLAATIPDYARPIDDGLYHAIDVYLKAHLWLTESEKEQLCRLMNCQKLSLEASTHAAQNERLPLRLIIQVLFFEQIRLRT TVSSWFFLTDNLDNSQQITSNNNNSNDIDQLQLLKNEESCQVEHEIRAAENDDVHEAAMKARVSELEKECQEMKEDIEKLVVKTKKSWRIFSKNSRLKQK LQSCNSEKSCDFKEPEPLPISNSVTTEPQQNPETSEVAPQNFRFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10026511 [exp]	0	1
AT1G30710			FAD-binding Berberine family p...		Lus10023369 [exp]	1.0	0.9990
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	5.1	0.8308
					Lus10006913 [exp]	5.5	0.6234
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	6.2	0.8308
AT1G70780			unknown protein		Lus10039287 [exp]	7.2	0.8308
					Lus10027606 [exp]	8.1	0.8160
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	8.8	0.8048
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	9.5	0.7674
AT5G24130			unknown protein		Lus10001061 [exp]	11.8	0.7307
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	12.0	0.7493

Compare expression of checked genes

Lus10026511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.