Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37210 394 / 2e-141 LOG3 LONELY GUY 3, lysine decarboxylase family protein (.1.2) AT3G53450 382 / 8e-137 LOG4 LONELY GUY 4, Putative lysine decarboxylase family protein (.1) AT2G28305 371 / 2e-132 ATLOG1 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) AT5G06300 343 / 2e-121 LOG7 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) AT4G35190 315 / 7e-110 LOG5 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) AT2G35990 312 / 4e-109 LOG2 LONELY GUY 2, Putative lysine decarboxylase family protein (.1.2.3) AT5G11950 300 / 2e-104 LOG8 LONELY GUY 8, Putative lysine decarboxylase family protein (.1.2) AT5G03270 274 / 1e-93 LOG6 LONELY GUY 6, lysine decarboxylase family protein (.1) AT5G26140 165 / 3e-52 ATLOG9 LONELY GUY 9, Putative lysine decarboxylase family protein (.1) AT1G50575 45 / 1e-05 Putative lysine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002226 [exp] 400 / 1e-143 AT2G37210 379 / 2e-135 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10023190 [exp] 386 / 3e-138 AT2G37210 364 / 6e-130 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Lus10021462 [exp] 377 / 2e-134 AT2G28305 386 / 1e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10016096 [exp] 374 / 3e-133 AT2G28305 384 / 7e-138 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Lus10012436 [exp] 338 / 4e-119 AT5G06300 332 / 7e-117 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10024328 [exp] 335 / 1e-117 AT5G06300 328 / 2e-115 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Lus10003335 [exp] 329 / 2e-115 AT4G35190 359 / 2e-127 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10025117 [exp] 329 / 2e-115 AT4G35190 373 / 1e-132 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Lus10022638 [exp] 328 / 9e-115 AT4G35190 365 / 2e-129 LONELY GUY 5, Putative lysine decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G127400 [exp] 417 / 1e-150 AT2G37210 396 / 3e-142 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.016G090500 [exp] 411 / 3e-148 AT2G37210 392 / 8e-141 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.009G010800 [exp] 381 / 3e-136 AT2G28305 359 / 8e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.004G212200 [exp] 379 / 1e-135 AT2G28305 361 / 1e-128 LONELY GUY 1, Putative lysine decarboxylase family protein (.1) Potri.005G237600 [exp] 348 / 3e-123 AT5G06300 338 / 2e-119 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.002G024000 [exp] 348 / 5e-123 AT2G37210 310 / 2e-108 LONELY GUY 3, lysine decarboxylase family protein (.1.2) Potri.002G012500 [exp] 334 / 1e-117 AT4G35190 300 / 5e-104 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.005G248900 [exp] 333 / 2e-117 AT4G35190 297 / 7e-103 LONELY GUY 5, Putative lysine decarboxylase family protein (.1) Potri.006G204800 [exp] 333 / 3e-117 AT5G06300 316 / 9e-111 LONELY GUY 7, Putative lysine decarboxylase family protein (.1) Potri.004G181800 [exp] 329 / 2e-115 AT4G35190 361 / 3e-128 LONELY GUY 5, Putative lysine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0349 [flax] [poplar] SLOG PF03641 [flax] [poplar] Lysine_decarbox Possible lysine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10026513 pacid=23164398 polypeptide=Lus10026513 locus=Lus10026513.g ID=Lus10026513.BGIv1.0 annot-version=v1.0 ATGGAGCTTGTAGAGAGTGAAATTAGGCAGTCTCCTTCCCCCCTTTCACGTTTCAAGAGGATTTGTGTCTTCTGTGGGAGTAGTCAGGGGAAGAAGAGTA GCTATCAGGATGCTGCTATTGAGCTTGGCCAAGAGTTGGTTTCTAGGAACATTGATCTGGTGTATGGTGGGGGTAGCATAGGTTTGATGGGTTTGGTCTC GCAAGCAGTTCATGATGGTGGTCGTCATGTTATTGGAGTTATTCCCAAGACGCTCATGCCTCGAGAGCTAACTGGGGAGACAGTAGGGGAAGTGAAGGCA GTTGCAGACATGCATCAAAGGAAGGCAGAGATGGCTAAACGTTCAGATGCCTTTATTGCCTTGCCAGGTGGCTATGGGACTCTGGAAGAACTGCTTGAAG TCATTACCTGGGCTCAACTTGGAATTCATGACAAGCCTGTGGGATTGCTGAATGTGGATGGTTACTACAACTCTCTGCTGTCATTCATTGACAAAGCCGT CGAGGAAGGATTCATCAGTCCCAGCGCTCGCTACATAATTGTCTCTGCTCCTACTGCCAAAGAGTTGGTCAAGAAACTAGAGGAGTATGCTCCCTGCCAT GAAAGAGTTGCTTCAAAGCTGAGCTGGGAAATAGAGCAGTTTGGTTACTCTCAGCAGAACTATGATATCTCTAGATGA
AA sequence Show only first row Show all	>Lus10026513 pacid=23164398 polypeptide=Lus10026513 locus=Lus10026513.g ID=Lus10026513.BGIv1.0 annot-version=v1.0 MELVESEIRQSPSPLSRFKRICVFCGSSQGKKSSYQDAAIELGQELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKA VADMHQRKAEMAKRSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARYIIVSAPTAKELVKKLEEYAPCH ERVASKLSWEIEQFGYSQQNYDISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10026513 [exp]	0	1
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	1.4	0.8854
AT1G30590			RNA polymerase I specific tran...		Lus10018154 [exp]	5.2	0.8777
AT1G54680			unknown protein		Lus10033821 [exp]	5.7	0.8840
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030598 [exp]	8.9	0.7859
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10024176 [exp]	11.0	0.8589
					Lus10036765 [exp]	16.2	0.8623
					Lus10029627 [exp]	18.2	0.8246
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	18.2	0.8623
AT5G03260		LAC11	laccase 11 (.1)		Lus10013800 [exp]	18.3	0.7942
					Lus10033943 [exp]	18.7	0.8071

Compare expression of checked genes

Lus10026513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.