Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37220 273 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 189 / 4e-58 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT5G50250 181 / 2e-55 CP31B chloroplast RNA-binding protein 31B (.1) AT1G60000 160 / 4e-48 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 148 / 2e-42 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT3G53460 141 / 8e-40 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT3G52150 134 / 7e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 108 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G01080 106 / 5e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G23830 100 / 4e-26 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013801 [exp] 380 / 3e-130 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10002222 [exp] 279 / 5e-94 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 276 / 9e-93 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10041952 [exp] 168 / 5e-50 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10017962 [exp] 166 / 1e-49 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10023723 [exp] 160 / 6e-47 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10029372 [exp] 157 / 5e-46 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 152 / 5e-44 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10010262 [exp] 111 / 6e-28 AT3G52150 262 / 5e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G090700 [exp] 286 / 7e-97 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 249 / 3e-82 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 194 / 3e-60 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 183 / 4e-56 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 177 / 2e-54 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.008G172100 [exp] 176 / 8e-54 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 165 / 2e-49 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G068300 [exp] 147 / 5e-42 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.006G202000 [exp] 145 / 2e-41 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.009G065900 [exp] 132 / 4e-37 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10026514 pacid=23164287 polypeptide=Lus10026514 locus=Lus10026514.g ID=Lus10026514.BGIv1.0 annot-version=v1.0 ATGGCTGCAACCGCTACGGCTTCCGTTTCATCCCTAATTCTCAACGCCAAGGCCTCCTCTATCGTCTCCCTTGCCAAGCCGACTTCCCTCTTCTTCGCCA TTCCATCGTCTTCCTTGCTCAAGCTTTCGTGCCTGCGTTCTTCCGTCCCATCTCCTTCGTCTAGGTTTGTGAGGAGGGTTGCAATTTCGAGCGAGTACGA CCAGGAGGAAGCCTATGAGCCCAGCTTCTCTCCTGACCTCAAGGTCTTCGTTGGAAATCTCCCTTTCTCTGCCGACAGCGCTCAGCTCGCTGGCCTCTTT GAGACTGCTGGAAATGTTGAGATGGTTGAGGTGATATATGACAAGGTAACTGGAAGGAGCAGGGGGTTTGGTTTCGTCACCATGTCTACTGCTCAGGAAG TTGAAAATGCTGTTCAGCAATTGAATGGCTATGAACTTGATGGAAGAGCACTGAGAGTGAACTCAGGACCTGCTCCTCCTCCGAGAGAGCGAGAATTCTC TCGGGATAGGGAATCTCCTTTCTCCTCTAGAGGGAGCAGCAGGGGTGGTGGATATGGTGGTGGTGGTGGTGGTAGCAGGGATGACGGTGGAAACCGTCTG TATGTGGGTAACCTTTCATGGGGTGTTGATAACTCGGCACTTGAGAACTTGTTCAGTGAGCAAGGGAATGTTGTGGAAGCTAGGGTGGTTTATGACAGGG ACAGTGGCAGGTCAAGGGGCTTTGGTTTCGTCACTTTCAGCTCACCTGACGAGATGAACAACGCCATTGACTCGTTGAATGGCGCTGAACTTGATGGGAG GCAAATTCGGGTGTCTGTGGCTGAAGCTAGGCAAAGGCGTCAGTTTTGA
AA sequence Show only first row Show all	>Lus10026514 pacid=23164287 polypeptide=Lus10026514 locus=Lus10026514.g ID=Lus10026514.BGIv1.0 annot-version=v1.0 MAATATASVSSLILNAKASSIVSLAKPTSLFFAIPSSSLLKLSCLRSSVPSPSSRFVRRVAISSEYDQEEAYEPSFSPDLKVFVGNLPFSADSAQLAGLF ETAGNVEMVEVIYDKVTGRSRGFGFVTMSTAQEVENAVQQLNGYELDGRALRVNSGPAPPPREREFSRDRESPFSSRGSSRGGGYGGGGGGSRDDGGNRL YVGNLSWGVDNSALENLFSEQGNVVEARVVYDRDSGRSRGFGFVTFSSPDEMNNAIDSLNGAELDGRQIRVSVAEARQRRQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Lus10026514 [exp]	0	1
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10013801 [exp]	1.0	0.9783
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Lus10002010 [exp]	2.8	0.9537
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10017378 [exp]	5.5	0.9220
AT5G63630			P-loop containing nucleoside t...		Lus10004017 [exp]	8.0	0.9238
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Lus10001057 [exp]	10.5	0.9316
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	14.4	0.9004
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042231 [exp]	14.4	0.9160
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10020990 [exp]	14.5	0.9085
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10002524 [exp]	14.7	0.8947
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	16.0	0.9077

Compare expression of checked genes

Lus10026514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.