Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04220 585 / 0 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G20080 550 / 0 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 541 / 0 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT2G21010 254 / 3e-81 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 229 / 7e-68 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 213 / 1e-61 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 179 / 6e-50 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G60950 103 / 6e-23 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT3G61030 99 / 6e-22 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G21040 90 / 7e-20 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040414 [exp] 604 / 0 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 599 / 0 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10017268 [exp] 565 / 0 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10013563 [exp] 556 / 0 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009226 [exp] 551 / 0 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10019782 [exp] 529 / 0 AT2G20990 825 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10014127 [exp] 523 / 0 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10005069 [exp] 496 / 1e-171 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10023529 [exp] 471 / 2e-162 AT5G04220 498 / 3e-173 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223900 [exp] 639 / 0 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 637 / 0 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G019800 [exp] 569 / 0 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G134200 [exp] 565 / 0 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.004G174600 [exp] 558 / 0 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.005G241700 [exp] 551 / 0 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 242 / 1e-72 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 236 / 3e-70 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 210 / 8e-61 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 170 / 2e-46 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10026515 pacid=23164356 polypeptide=Lus10026515 locus=Lus10026515.g ID=Lus10026515.BGIv1.0 annot-version=v1.0 ATGGGATGGGTTTACAGGCTGTTAGGAATTCTAGGGTTTGCATTCGGGTTTCCAATTGGGATTTTGTTCGGTTTGGCTGTGTTGTCCTGCTTTCAACCCG CCGATGTTGAGGAACCGGTGATCCGGCCGCTCCATGAACTGGATAAAGAATCTCTACTGGAGGTTTTCTCAGAGCTTCCAATGTGGGTGAAGCATCCTGA TTATGAACGAATGGATTGGATGAACAAATTCGTGTATGAAATGTGGCCTAGCCTCGATAAGGCAATATGCGGGATGATAAGCAGCATTTTGAATCCATTG TTCGATGAGTACGTTCGGCTATACTGCATTACCTCGATCGAGCTCAAAAGGTTTACTCTTGGAACTCTTCCTCCAAACATTCAGGGCGTGAAAGTGCTGG AAACAGACGAGAAAGAATTACTGCTGGACGCGGTAGTTAGCTGGGCTGGAAATCCCAACATAACTTTGGTTGTGAAATTCCTCTTTCTACCCATCACAAT TCAGCTGTTGGATCTCCAAATATTTGCAGCGCTGAGGATCACTCTTCGGCCTCTCGTTCCTACTTTCCCTTGCTTTGCTGCCATAGCAGTTTCTCTGCTT GACAAGCCAACTGTGGATTTTGGGTTGAAGTTGCTTGGAGCTGATCTTATGGCCATCCCAGGACTTTACCAATTTGTTCAGGAACAAATACGCAAGCAAA TTGCCAGCATGTATCTGTGGCCGAAGAATCTAGTTATTCCAATACTCGACGAGTCACTAGGGGCTATCAACAAGCCAGTAGGCATTCTGCATGTGAAGGT GGTTAGAGCACTGAAGCTCTTGAAAAAAGACTTGTTAGGAGCCTCTGATCCATATGTTAAGCTCAGCCTAATCGGGGAGAAACTTACAGCCAAGACAACT AGTATAAAGATGAAGAATCTGAACCCTGAGTGGAATGAAGATTTCAGGATGACTGTAAAGGACCCCAAGTCTCAAGTCCTCGAACTCCACGTTTATGACT GGGAAAAGATTGGGAAGCATGGCAATATTGGGGTGCAACTAGTTCCCTTGGAATTGCTGGGCCCAAACGAGAAGAAGGAATTCGCCCTGGAACTGACGAA GACCACAAACCCTCACTATAACGATCTCCATAAGAAGAAGTACAGAGGGAAACTTATTGTGGAGCTGACATTTAGTCCATTCAGAGAAGAGAACCACAAG CCCGTTGGACGATTGGGTGATTCCACTTCTCTTGATAGTAAGGAATCCGGCAATGATTGTCATGTGGACGACAATACTAGAGGTGGATTGCTTATAGTGA CAGTTCTAGGAGCAGAGAATATTGAAGGAAACCACCATAACAACCCTTATGCTCTTGTTGCATTCAGAGGAGAAGAGAAGAGAACCAAAGTGATGAAGAA GACCAGGGACCCAAAGTGGAACGAGGAGTTCCAGTTTGTGGCGGAGGAGACGCCGGTGAAGGAGAAGATCCGCATAGAAGTGATGAGTAAGAGGACAGGG TTTGGATTCCGACCCAAGGAAACGTTGGGGTATATTCAGATAAGTTTAGGAGATGTGGTTCACAATGGGAGGATAAACCAGAAGTACCATTTAATGAACT CCAAGAATGGAGTTATAAGTGTTGACATCCGGTGGAAGCTGATTTGA
AA sequence Show only first row Show all	>Lus10026515 pacid=23164356 polypeptide=Lus10026515 locus=Lus10026515.g ID=Lus10026515.BGIv1.0 annot-version=v1.0 MGWVYRLLGILGFAFGFPIGILFGLAVLSCFQPADVEEPVIRPLHELDKESLLEVFSELPMWVKHPDYERMDWMNKFVYEMWPSLDKAICGMISSILNPL FDEYVRLYCITSIELKRFTLGTLPPNIQGVKVLETDEKELLLDAVVSWAGNPNITLVVKFLFLPITIQLLDLQIFAALRITLRPLVPTFPCFAAIAVSLL DKPTVDFGLKLLGADLMAIPGLYQFVQEQIRKQIASMYLWPKNLVIPILDESLGAINKPVGILHVKVVRALKLLKKDLLGASDPYVKLSLIGEKLTAKTT SIKMKNLNPEWNEDFRMTVKDPKSQVLELHVYDWEKIGKHGNIGVQLVPLELLGPNEKKEFALELTKTTNPHYNDLHKKKYRGKLIVELTFSPFREENHK PVGRLGDSTSLDSKESGNDCHVDDNTRGGLLIVTVLGAENIEGNHHNNPYALVAFRGEEKRTKVMKKTRDPKWNEEFQFVAEETPVKEKIRIEVMSKRTG FGFRPKETLGYIQISLGDVVHNGRINQKYHLMNSKNGVISVDIRWKLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	0	1
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	1.4	0.9372
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	2.8	0.9152
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	4.0	0.9219
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	4.2	0.9057
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009138 [exp]	5.0	0.9066
AT2G27370		CASP3	Casparian strip membrane domai...		Lus10017008 [exp]	5.2	0.9186
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	8.9	0.9009
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10024770 [exp]	9.2	0.8858
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	12.7	0.9046
AT1G50650			Stigma-specific Stig1 family p...		Lus10006512 [exp]	13.5	0.8862

Compare expression of checked genes

Lus10026515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.