Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37040 1241 / 0 PAL1, ATPAL1 PHE ammonia lyase 1 (.1) AT3G53260 1226 / 0 PAL2, ATPAL2 phenylalanine ammonia-lyase 2 (.1) AT3G10340 1165 / 0 PAL4 phenylalanine ammonia-lyase 4 (.1) AT5G04230 1029 / 0 PAL3, ATPAL3 phenyl alanine ammonia-lyase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013805 [exp] 1481 / 0 AT2G37040 1245 / 0.0 PHE ammonia lyase 1 (.1) Lus10023531 [exp] 1199 / 0 AT2G37040 1198 / 0.0 PHE ammonia lyase 1 (.1) Lus10040416 [exp] 1197 / 0 AT2G37040 1194 / 0.0 PHE ammonia lyase 1 (.1) Lus10009220 [exp] 133 / 3e-32 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1) Lus10001405 [exp] 114 / 4e-30 AT3G10340 122 / 3e-34 phenylalanine ammonia-lyase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126800 [exp] 1296 / 0 AT2G37040 1269 / 0.0 PHE ammonia lyase 1 (.1) Potri.016G091100 [exp] 1286 / 0 AT2G37040 1267 / 0.0 PHE ammonia lyase 1 (.1) Potri.010G224100 [exp] 1228 / 0 AT3G53260 1240 / 0.0 phenylalanine ammonia-lyase 2 (.1) Potri.008G038200 [exp] 1226 / 0 AT2G37040 1213 / 0.0 PHE ammonia lyase 1 (.1) Potri.010G224200 [exp] 1209 / 0 AT2G37040 1228 / 0.0 PHE ammonia lyase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00221 [flax] [poplar] Lyase_aromatic Aromatic amino acid lyase
Representative CDS sequence Show only first row Show all	>Lus10026518 pacid=23164261 polypeptide=Lus10026518 locus=Lus10026518.g ID=Lus10026518.BGIv1.0 annot-version=v1.0 ATGGCACCAACACCAACCGCAGCAACCATTGCCCAGAACGGCAACCACCACCACACCAACGGCTCGTCGGTGTCGTCATTGGGCCATTTGTGCCCCACCG CCCCTTCCGCCACCGGCAACCACTACCAAACCGACCCACTCAACTGGGGCGCCGCCGCTGATGCCATGAAAGGGAGCCACCTTGACGAGGTGAAACAGAT GGTGGCAGAGTACCGGAAGCCTTCGATCAAACTGGTCGGGGAGTCGCTCACCATCGCTCAGGTCGCCGCGATCGCCGCCGGAAATGCCCCTGATGTCACG GTGGAGCTCTCCGAGTCTGCCAGGGACCGCGTCAAAGCCAGCAGCGACTGGGTCATGGAGAGCATGAACAAAGGTACCGACAGCTACGGCGTCACCACCG GATTCGGCGCCACTTCTCATCGGAGGACCAAACAAGGCGGCGCCCTTCAGAAGGAGCTCATCAGGTTCTTGAATGCTGGAATCTTCGGCAACGGTACTGA ATCAAGCCATACTCTGCCTCACTCGGCCACAAGAGCAGCTATGCTTGTCAGGATCAACACACTCCTCCAGGGATACTCCGGGATTCGATTCGAGATCTTG GAAGCCATCACCAAGCTTCTCAACAGCAACATTACTCCATGTTTGCCACTCCGCGGAACAATCACAGCTTCCGGTGACTTGGTACCACTCTCTTATATTG CTGGTTTGCTAACCGGAAGGCCTAACTCGAAAGCCACCGGTCCGAACGGTGAGATCATGGATGCCACCGAAGCATTCCGTTTGGCTGGGATCGATTCCGG TTTCTTCGAGTTGCAGCCGAAAGAAGGGCTTGCTCTTGTCAATGGTACAGCTGTTGGTTCTGGTTTGGCATCCATGGTTCTGTTTGAAGCCAATGTTCTT TCTGTACTGTCTGAGATATTATCAGCCATTTTCGCGGAGGTTATGAACGGGAAGCCAGAGTTCACTGACCATTTGACTCACAAGTTGAAGCATCATCCGG GGCAGATCGAAGCTGCAGCAATAATGGAGCATATTCTCGACGGGAGTGCTTACATGAAGGCAGCCAAGAAGTTGCACGAGATCGATCCTCTCCAGAAGCC GAAGCAGGATCGTTACGCTCTCAGGACTTCGCCTCAATGGCTAGGACCTCAGATCGAAGTCATCAGATTCTCAACCAAGTCGATTGAGAGAGAGATCAAC TCGGTGAACGACAACCCTCTGATCGATGTATCCAGGAGCAAGGCCATTCATGGTGGCAACTTCCAGGGAACTCCCATCGGAGTGTCAATGGACAATGTCC GGTTGGCGATTGCTTCTATCGGGAAGTTAATGTTCGCTCAGTTCAGTGAGCTAGTCAATGATTTCTACAACAATGGACTGCCATCGAATCTCACGGCCAG CAGGAACCCGAGCTTGGACTATGGTTTCAAAGGAGCTGAAATCGCCATGGCCTCCTACTGCTCCGAGCTCCAATACCTTGCAAATCCTGTCACGACACAT GTTCAGAGCGCGGAGCAGCACAACCAGGACGTGAACTCGTTGGGATTGATCTCTTCGAGGAAGACTGCCGAAGCTGTCGATATCCTAAAGTTGATGTCTT CCACTTACTTGGTGGGACTTTGTCAAGCTGTTGACTTGAGGCACTTGGAAGAGAATCTCAGGAGTGCAGTGAAGAACACTGTGAGCCAAGTGGCTAAGAA GGTTTTAACAATGGGGTCGAACGGAGAGCTCCACCCATCGAGGTTCTGCGAGAAGGACTTGCTTCAGGTGGTCGATCACGAATACGTGTTTGCATATGCT GACGATGCTTGCAGCGCAAGCTACCCGCTGATGCAGAAGCTGAGACAGGTTTTGGTAGACCATGCATTGGCCAATGGAGAGAGTGAGACGAATGCTAGCA CTTCAGTGTTCCAAAAGATTGTAGCTTTCGAGGAAGAGCTGAAAACCCTTCTTCCTAAAGAAGTGGAGAGTGTTAGGGCAGCTTATGAAAGTGGTAAAGC TCCTATCCCTAACAAGATATTGGAGTGCAGATCTTACCCGTTGTATAAATTTGTGAGGGAGGAGCTCGGGACGGCTTTGCTGACCGGAGAGAAAGTTATG TCGCCCGGGGAGGAATTCGACAAAGTGTTCACTGCATTGTGCGAGGGGAAGATCATCGATCCGATGATGGATTGCCTCAACGAATGGAATGGTGCCCCTA TCCCAATCTGCTAA
AA sequence Show only first row Show all	>Lus10026518 pacid=23164261 polypeptide=Lus10026518 locus=Lus10026518.g ID=Lus10026518.BGIv1.0 annot-version=v1.0 MAPTPTAATIAQNGNHHHTNGSSVSSLGHLCPTAPSATGNHYQTDPLNWGAAADAMKGSHLDEVKQMVAEYRKPSIKLVGESLTIAQVAAIAAGNAPDVT VELSESARDRVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEIL EAITKLLNSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEIMDATEAFRLAGIDSGFFELQPKEGLALVNGTAVGSGLASMVLFEANVL SVLSEILSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREIN SVNDNPLIDVSRSKAIHGGNFQGTPIGVSMDNVRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTH VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTYLVGLCQAVDLRHLEENLRSAVKNTVSQVAKKVLTMGSNGELHPSRFCEKDLLQVVDHEYVFAYA DDACSASYPLMQKLRQVLVDHALANGESETNASTSVFQKIVAFEEELKTLLPKEVESVRAAYESGKAPIPNKILECRSYPLYKFVREELGTALLTGEKVM SPGEEFDKVFTALCEGKIIDPMMDCLNEWNGAPIPIC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10026518 [exp]	0	1
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10013805 [exp]	3.0	0.9550
AT3G05550			Hypoxia-responsive family prot...		Lus10020658 [exp]	4.6	0.9658
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	6.9	0.9510
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	7.0	0.9689
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	8.0	0.9661
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10029862 [exp]	10.0	0.9444
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10020136 [exp]	12.7	0.9491
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10042662 [exp]	16.1	0.9438
AT1G47530			MATE efflux family protein (.1...		Lus10042344 [exp]	17.0	0.9630
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	17.7	0.9591

Compare expression of checked genes

Lus10026518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.