Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03290 643 / 0 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 611 / 0 IDH-VI isocitrate dehydrogenase VI (.1) AT4G35260 341 / 8e-116 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT4G35650 326 / 4e-110 IDH-III isocitrate dehydrogenase III (.1) AT2G17130 323 / 5e-109 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT1G32480 177 / 7e-54 IDH-IV isocitrate dehydrogenase IV (.1) AT1G31180 147 / 2e-40 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1) AT5G14200 146 / 4e-40 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT1G80560 145 / 1e-39 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT1G65930 52 / 3e-07 cICDH cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013806 [exp] 738 / 0 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 712 / 0 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 692 / 0 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10041824 [exp] 337 / 6e-114 AT4G35260 656 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10028374 [exp] 336 / 9e-114 AT4G35260 659 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10014436 [exp] 318 / 8e-107 AT4G35260 620 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023937 [exp] 295 / 2e-98 AT4G35260 549 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10030344 [exp] 150 / 3e-40 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041077 [exp] 139 / 2e-37 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G091200 [exp] 663 / 0 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.006G126700 [exp] 655 / 0 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.004G204300 [exp] 334 / 4e-113 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.005G099600 [exp] 330 / 8e-112 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 329 / 3e-111 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.007G064000 [exp] 327 / 2e-110 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.001G185600 [exp] 149 / 5e-41 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Potri.017G144541 [exp] 50 / 1e-06 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.004G074900 [exp] 50 / 2e-06 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.001G347800 [exp] 50 / 2e-06 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10026519 pacid=23164201 polypeptide=Lus10026519 locus=Lus10026519.g ID=Lus10026519.BGIv1.0 annot-version=v1.0 ATGGCGTTCCAGCACCTCATGAGGCGCGCTCTCAGAAGCCGCCCCGACCACATCCTCTCCACTTCCTCCGCCACTAGGCCTTTCTCCTCCGCTCCCATTA CGGCAACTCTCTTCCCCGGCGACGGTATCGGCCCCGAGATCGCCGAGTCCGTTAAGCAGGTGTTCAGGGAAGCTGAGGTACCAATACAATGGGAAGAACA TTATGTTGGTACTGAAATAGATCCTAGAACCCAGAGCTTTCTGACATGGGAAAGTTTGGAGTCAGTAAGAAGAAACCGAGTGGGTCTGAAAGGGCCAATG GCTACCCCAATCGGCAAAGGCCATCGTTCATTGAACCTTACTCTCAGGAAAGAACTTAATTTGTATGCCAATGTCAGGCCTTGCTACAGCCTTCCTGGTT ACAAAACCAAATACGATGATGTGAATCTCATCACCATTCGTGAAAACACTGAAGGAGAATACAGTGGGCTTGAGCACCAAGTGGTGAGAGGTGTGGTTGA AAGTCTCAAGATCATTACTCGTCAGGCCAGTTTGAGGGTGGCCGAATATGCTTTCTACTATGCAAAGGCTCATGGAAGAGAGAGAGTGTCTGCCATACAT AAAGCTACTATCATGCAGAAAACCGATGGTCTTTTCCTCAAGTGCTGTCGTGAGGTTGCTGAAAAGTATCCTGAGATTACTTACGAGGAGGTTGTCATTG ACAACTGTTGCATGATGCTTGTGAAAAATCCAGCTCTTTTTGATGTACTGGTTATGCCTAACCTCTACGGTGACATCATCAGTGATCTTTGTGCTGGTTT GATTGGTGGTCTCGGGTTGACACCAAGCTGCAATATTGGAGAAGGGGGAATTGCTCTTGCTGAGGCTGTCCATGGCTCCGCCCCTGACATTGCTGGGAAG AACTTGGCTAACCCAACTGCTCTGCTACTGAGTGGTGTGTCCATGCTGCGGCATCTAGAACTCCACGATAAGGCAGAAAGGATTCAGAAGGCCGTTCTGG GCACCATTGCGGAAGGCAAGTACCGAACGGCAGATCTTGGTGGTAGCTCTACGACATCTGATTTTACTAAAGCCATCTGCGACCACCTTTGA
AA sequence Show only first row Show all	>Lus10026519 pacid=23164201 polypeptide=Lus10026519 locus=Lus10026519.g ID=Lus10026519.BGIv1.0 annot-version=v1.0 MAFQHLMRRALRSRPDHILSTSSATRPFSSAPITATLFPGDGIGPEIAESVKQVFREAEVPIQWEEHYVGTEIDPRTQSFLTWESLESVRRNRVGLKGPM ATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTKYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFYYAKAHGRERVSAIH KATIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGK NLANPTALLLSGVSMLRHLELHDKAERIQKAVLGTIAEGKYRTADLGGSSTTSDFTKAICDHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10026519 [exp]	0	1
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	1.0	0.9748
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10013806 [exp]	2.0	0.9575
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	2.0	0.9596
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10037680 [exp]	3.6	0.9414
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	4.2	0.9593
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Lus10003076 [exp]	4.2	0.9451
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027857 [exp]	5.3	0.9276
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10028892 [exp]	5.5	0.9448
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	5.9	0.9472
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10001524 [exp]	6.5	0.9492

Compare expression of checked genes

Lus10026519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.