Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37035 344 / 6e-115 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013807 [exp] 757 / 0 AT2G37035 436 / 9e-151 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126600 [exp] 508 / 1e-178 AT2G37035 360 / 5e-121 unknown protein Potri.016G091400 [exp] 502 / 2e-176 AT2G37035 337 / 6e-112 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026520 pacid=23164280 polypeptide=Lus10026520 locus=Lus10026520.g ID=Lus10026520.BGIv1.0 annot-version=v1.0 ATGACCGATCAGCCGCGGCTGAGCATCAACAATCTACGGCGGACGACTCACCTTTTCAAAGAAGCTACAGCTTGCTTCTCCTCCAATTTCTTCACATTCC TCTTCCTGTCTCTCCTCCTCTTCTCTTTCCGAGCTCTAGTAGAGAATGGGGCCGACCTCCTCACGTCCTTCATCGATCGCGACCCTTCCCTCAAATCCCT ACTCTCCCACCTTGACCTGGCCGGAAACCACCACGAACAGCCTAACGGCGTTAACGAGATCCGCTCTCGCTTCCACCGTCGACGCCGTCCCTTCCTCCAC CTTACTCGCGTCGGAACCCTAGATGACGATTTCTTCTCCGAAGACGACGATCCAGACCGATCCCTCTTCGGCTCCAATCGCATGATCCCCCCGAATGTGA GTGCTTTGATTCTCAACAATTTTAATCCGAGATACGGTTACTCCGAATTGGTCGTGGATAATGGAATTAGGGTTCCGGAAATTGTTCGCTCCGGGGTTCA GTTCAAGGCGGAGGATAGTGTGCGGGTTGAGGATAGTGGAGCGGACGAGATTGATTACGGCGGGAATGGGGGTTTTCAGTTCTTCGTCAAGGGATTGGAG CTCGGCGGCGGAGATGCGGCGTCACTTTTCTACCTAGTGAGTTTCTTGTCTGCAGCTTATGGTTGGGTGATCCTTGGGTTCACAGCAATGTACTCGTGGA TATTGGGAATTGTGTTCGTTGCTGTGGTGAATGATTTGTTGAAAAGGTTCAATTCATTTGCTGACATTGTTTGGGATGGTTCTAGATTGGGGCTCAAGAA ACTTACCGGGTTCATTCTGATGAGATGGGCCGTTAGGGATGCTTTGACACAGCTGGTAGGATTGTGGTACTTTGGTGAAGTTAAGGATCAGTTTTCGTTT TTCAAGCTGTTTGTGAGGTTAAAGTTGATGCCTTTCTCAGTTATGTCTCCATGGATTGAAGGATATGAGAAGGAGGTATCAGGTTTCTTGTTCACTTGGC TTCTGTTGGATACTTTGGTGGGGTTAATATTTGCAGTGGATGCTTGGGTTACGGTCGTTGATTCCAGGAGAACTGGTAGGGAGATTGTGAAGGAAGGTTG TTACTTGATATCAACATTGTTCCACCAAGCTGTTCAGATAAGGTGTATTGAAGCAATTCTCTGTGGATCCGCGACTAGATGGGTCTTATCCCGGATAGTT GGGAAGCATTTGGCTGCTGTGCTCCAATCCGTTGTGGAGGTTTACTTCATGGTGGCCTGGCTGATATTTTACTTTGCAGCAAGATACAAAGAAGCTCACT CTGAAGGAAGGAGGTTTGGGAGGAGAGAATTGGAAAGGTTATTTGATGGCCTTAGATGA
AA sequence Show only first row Show all	>Lus10026520 pacid=23164280 polypeptide=Lus10026520 locus=Lus10026520.g ID=Lus10026520.BGIv1.0 annot-version=v1.0 MTDQPRLSINNLRRTTHLFKEATACFSSNFFTFLFLSLLLFSFRALVENGADLLTSFIDRDPSLKSLLSHLDLAGNHHEQPNGVNEIRSRFHRRRRPFLH LTRVGTLDDDFFSEDDDPDRSLFGSNRMIPPNVSALILNNFNPRYGYSELVVDNGIRVPEIVRSGVQFKAEDSVRVEDSGADEIDYGGNGGFQFFVKGLE LGGGDAASLFYLVSFLSAAYGWVILGFTAMYSWILGIVFVAVVNDLLKRFNSFADIVWDGSRLGLKKLTGFILMRWAVRDALTQLVGLWYFGEVKDQFSF FKLFVRLKLMPFSVMSPWIEGYEKEVSGFLFTWLLLDTLVGLIFAVDAWVTVVDSRRTGREIVKEGCYLISTLFHQAVQIRCIEAILCGSATRWVLSRIV GKHLAAVLQSVVEVYFMVAWLIFYFAARYKEAHSEGRRFGRRELERLFDGLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37035			unknown protein		Lus10026520 [exp]	0	1
AT2G37035			unknown protein		Lus10013807 [exp]	2.2	0.7899
AT5G19080			RING/U-box superfamily protein...		Lus10034030 [exp]	6.3	0.7886
AT4G02040			unknown protein		Lus10019069 [exp]	7.3	0.8320
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	10.6	0.7889
AT3G19240			Vacuolar import/degradation, V...		Lus10014053 [exp]	11.5	0.7793
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	11.7	0.8141
AT5G46170			F-box family protein (.1)		Lus10038511 [exp]	12.7	0.7612
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10010728 [exp]	13.2	0.7598
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	17.6	0.8070
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	19.2	0.7901

Compare expression of checked genes

Lus10026520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.