Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09830 152 / 4e-45 Protein kinase superfamily protein (.1.2) AT5G03320 137 / 1e-39 Protein kinase superfamily protein (.1) AT2G28940 72 / 1e-15 Protein kinase superfamily protein (.1.2) AT1G69790 64 / 1e-12 Protein kinase superfamily protein (.1) AT5G02290 64 / 2e-12 NAK Protein kinase superfamily protein (.1.2) AT1G14370 64 / 2e-12 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT1G07570 63 / 3e-12 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 62 / 8e-12 APK1B protein kinase 1B (.1.2.3) AT2G26290 60 / 3e-11 ARSK1 root-specific kinase 1 (.1) AT5G15080 59 / 4e-11 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013811 [exp] 254 / 2e-88 AT3G09830 145 / 9e-43 Protein kinase superfamily protein (.1.2) Lus10038711 [exp] 115 / 4e-31 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 108 / 2e-28 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016536 [exp] 67 / 1e-13 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021489 [exp] 62 / 5e-12 AT2G02800 459 / 3e-161 protein kinase 2B (.1.2) Lus10030668 [exp] 62 / 8e-12 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 62 / 9e-12 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10040804 [exp] 61 / 1e-11 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022591 [exp] 61 / 2e-11 AT2G02800 462 / 2e-162 protein kinase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126000 [exp] 187 / 3e-58 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G036800 [exp] 135 / 2e-38 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G225300 [exp] 127 / 1e-35 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.009G031500 [exp] 87 / 6e-21 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 87 / 9e-21 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G072200 [exp] 66 / 3e-13 AT2G17220 391 / 2e-134 kinase 3, Protein kinase superfamily protein (.1.2) Potri.014G052700 [exp] 63 / 2e-12 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.010G203400 [exp] 63 / 2e-12 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 63 / 3e-12 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.017G077300 [exp] 61 / 1e-11 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026523 pacid=23164282 polypeptide=Lus10026523 locus=Lus10026523.g ID=Lus10026523.BGIv1.0 annot-version=v1.0 ATGAAGTGCTTTCACTTCTATATCGGAGAAAGGAAGGGTGATCTAAGGACAACAAAGTCTACATCAGTTACATCATTGTACTCGAATTTTACTGATCGTG AAATGGGGAGATCGGGGTCAGAGTTGAATTCTCAAAATGTCTCAGCCACCAGTGTAGAATCAATGGGGAGGCCTAGCTACCCTAGTCTGTCCCAGAGACC AAGCAATCTGAGATCTTTCACTGTTTCTGAACTTAAGGCCGCCACCAGGAACTTCAGTCGCTCTGTCATGGTTGGAGAGGGTGGATTTGGATGCGTCTAC AGGGGATCAATAAAGAGTGCGGAGGAGCCTCTCAAAAAGATTGAAGTCGCTGTGAAACAGCTTGGTAAAAGGGGAACTCAGGCAAGTCTTTCCCCTCTAG GCAGTCCTCTATCTTCATTTAGTAGTTACTAA
AA sequence Show only first row Show all	>Lus10026523 pacid=23164282 polypeptide=Lus10026523 locus=Lus10026523.g ID=Lus10026523.BGIv1.0 annot-version=v1.0 MKCFHFYIGERKGDLRTTKSTSVTSLYSNFTDREMGRSGSELNSQNVSATSVESMGRPSYPSLSQRPSNLRSFTVSELKAATRNFSRSVMVGEGGFGCVY RGSIKSAEEPLKKIEVAVKQLGKRGTQASLSPLGSPLSSFSSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09830			Protein kinase superfamily pro...		Lus10026523 [exp]	0	1
AT1G03080			kinase interacting (KIP1-like)...		Lus10006896 [exp]	3.6	0.7830
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10022096 [exp]	3.9	0.7324
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10021248 [exp]	5.5	0.6957
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	7.2	0.7776
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10003261 [exp]	19.2	0.6965
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10028232 [exp]	23.5	0.6756
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10018849 [exp]	25.9	0.6288
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043267 [exp]	26.3	0.6519
AT3G09830			Protein kinase superfamily pro...		Lus10013811 [exp]	27.7	0.6812
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10023073 [exp]	27.9	0.7095

Compare expression of checked genes

Lus10026523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.