Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09830 332 / 2e-113 Protein kinase superfamily protein (.1.2) AT5G03320 322 / 7e-110 Protein kinase superfamily protein (.1) AT2G39110 313 / 8e-106 Protein kinase superfamily protein (.1) AT2G28940 291 / 8e-99 Protein kinase superfamily protein (.1.2) AT3G28690 251 / 2e-82 Protein kinase superfamily protein (.1.2.3) AT3G01300 253 / 5e-82 Protein kinase superfamily protein (.1) AT5G15080 251 / 4e-81 Protein kinase superfamily protein (.1) AT1G61590 227 / 2e-72 Protein kinase superfamily protein (.1) AT5G01020 223 / 6e-71 Protein kinase superfamily protein (.1) AT1G26970 221 / 2e-70 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013812 [exp] 465 / 1e-168 AT3G09830 342 / 2e-117 Protein kinase superfamily protein (.1.2) Lus10038711 [exp] 330 / 4e-112 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 326 / 3e-110 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016536 [exp] 294 / 4e-98 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 294 / 5e-98 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005255 [exp] 248 / 1e-79 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 248 / 1e-79 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10030796 [exp] 231 / 3e-73 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10033294 [exp] 225 / 2e-72 AT1G61590 552 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126000 [exp] 358 / 4e-123 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G225300 [exp] 333 / 1e-113 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.008G036800 [exp] 330 / 1e-112 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 292 / 2e-97 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G031500 [exp] 284 / 2e-94 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G123800 [exp] 254 / 2e-82 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 254 / 3e-82 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 244 / 1e-78 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 242 / 8e-78 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 240 / 4e-77 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10026524 pacid=23164389 polypeptide=Lus10026524 locus=Lus10026524.g ID=Lus10026524.BGIv1.0 annot-version=v1.0 ATGCCTAATGGAAGTGTCGAGGATCATTTGTCCAGTCGGGCAGAAACACCTCTCCCATGGAACATGAGACTCCGAGTTGCACAAGATGCTGCACGTGGCT TAACTTACCTTCACGAAGAAATGGATTTCCAGATCATCTTCAGGGACTTCAAATCTTCAAATATCCTACTAGATGGGCAGTGGAACGCCAAATTATCAGA TTTTGGATTGGCTAGGTTGGGCCCGGATGAAGGATTCACCCATGTCTCAACAGCGGTTGTTGGTACAATGGGATATGCAGCTCCGGAATATGTCCAAACT GGACGCCTCACGTCAAAAAGCGACGTATGGAGTTACGGTGTCTTCCTCTACGAGCTCCTCACAGGTAGGCGCCCCATGGATCGAAACCGACCCAGGAACG AGCAAAATCTGTTGGATTGGGTAAAGCCTCACCTATCAGAGAAGAAGTTCCCGCAAATCTTGGACCCTAGGCTGCATGGCAAGTACCGGCTAAGGTCAGC ACAGAAGCTCGCCAATATAGCAAACAAGTGTTTGGTTAGAAACCCAAAGGCGCGCCCCAAGATGAGCGAGGTGCTGGAAATGGTGAACCGGGTTGTGGAT TCATCTACAGAGTCTTCAAGTCCTGAATTAAGCTTCAAGAGCTCAGCATCAATGGCGAAGAAAAGGAATGAGGAATTGAAAGCCCTGGATGGCAGTTGGT TCATGAGGGTGTGCACACCAAGGCTCGTCAGAAGCTGCTGA
AA sequence Show only first row Show all	>Lus10026524 pacid=23164389 polypeptide=Lus10026524 locus=Lus10026524.g ID=Lus10026524.BGIv1.0 annot-version=v1.0 MPNGSVEDHLSSRAETPLPWNMRLRVAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDGQWNAKLSDFGLARLGPDEGFTHVSTAVVGTMGYAAPEYVQT GRLTSKSDVWSYGVFLYELLTGRRPMDRNRPRNEQNLLDWVKPHLSEKKFPQILDPRLHGKYRLRSAQKLANIANKCLVRNPKARPKMSEVLEMVNRVVD SSTESSSPELSFKSSASMAKKRNEELKALDGSWFMRVCTPRLVRSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09830			Protein kinase superfamily pro...		Lus10026524 [exp]	0	1
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	2.0	0.8691
AT2G23450			Protein kinase superfamily pro...		Lus10000741 [exp]	2.0	0.8784
AT5G62200			Embryo-specific protein 3, (AT...		Lus10027387 [exp]	3.5	0.8780
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10029373 [exp]	3.5	0.8626
AT1G34750			Protein phosphatase 2C family ...		Lus10020924 [exp]	4.2	0.8877
AT2G14910			unknown protein		Lus10013888 [exp]	5.8	0.8461
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10017166 [exp]	6.9	0.8588
AT1G24560			unknown protein		Lus10029143 [exp]	7.2	0.8322
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	13.9	0.8464
					Lus10008052 [exp]	14.7	0.8650

Compare expression of checked genes

Lus10026524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.