Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03330 272 / 2e-89 Cysteine proteinases superfamily protein (.1.2) AT5G04250 238 / 2e-76 Cysteine proteinases superfamily protein (.1.2) AT3G02070 223 / 4e-72 Cysteine proteinases superfamily protein (.1) AT3G22260 210 / 7e-67 Cysteine proteinases superfamily protein (.1.2.3) AT2G39320 107 / 1e-27 Cysteine proteinases superfamily protein (.1) AT5G67170 70 / 4e-13 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT2G27350 54 / 6e-08 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013813 [exp] 619 / 0 AT5G03330 280 / 2e-92 Cysteine proteinases superfamily protein (.1.2) Lus10023019 [exp] 365 / 4e-126 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2) Lus10001404 [exp] 362 / 1e-124 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2) Lus10038708 [exp] 256 / 9e-83 AT5G04250 367 / 2e-126 Cysteine proteinases superfamily protein (.1.2) Lus10037977 [exp] 249 / 3e-80 AT5G04250 361 / 5e-124 Cysteine proteinases superfamily protein (.1.2) Lus10037388 [exp] 236 / 1e-75 AT5G04250 239 / 6e-77 Cysteine proteinases superfamily protein (.1.2) Lus10027312 [exp] 211 / 3e-66 AT3G22260 303 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Lus10010459 [exp] 208 / 5e-66 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10003816 [exp] 174 / 9e-53 AT3G22260 298 / 2e-103 Cysteine proteinases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G094700 [exp] 357 / 5e-123 AT5G03330 316 / 9e-107 Cysteine proteinases superfamily protein (.1.2) Potri.006G125900 [exp] 343 / 3e-117 AT5G03330 329 / 1e-111 Cysteine proteinases superfamily protein (.1.2) Potri.008G036700 [exp] 258 / 9e-84 AT5G04250 372 / 2e-128 Cysteine proteinases superfamily protein (.1.2) Potri.010G225400 [exp] 257 / 3e-83 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.016G019700 [exp] 232 / 2e-75 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G140200 [exp] 223 / 8e-72 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.006G021700 [exp] 218 / 3e-70 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G036900 [exp] 215 / 1e-69 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.005G140500 [exp] 67 / 3e-12 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.004G196800 [exp] 51 / 6e-07 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10026525 pacid=23164326 polypeptide=Lus10026525 locus=Lus10026525.g ID=Lus10026525.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCTCGCGATCATGATTCCGAATCGGATGTAATCCGGTGGGGGATGAGCCTTCTGGAAGTGGACCCACCCTTTTATCCCGGCTACTACGGCG GCGAAACAATTCAAAACGACCATGCCTATCATCATCTTCCTCGCCATGACGATTGCGAAGCTGAAGATAACGACGAAATCATAGCTCGCACACTTCAGGG GGATTTCTCCCAGCTCGCTCTCAGAGACTCTTCAAGGTATTCCCGTGAACAAGTAGCGGAAGACTTCTCCCGGCCGTCCTATTATGGCGACAGCGACTGG CCTACTGCCTCGACGAGTAACGACTCGTTTAATCACGATCGTCGCAATGAGGATTCTGATGATACGGTGTCCTCTAGCTTGTGTTCAAGCCCTAGCTATG AGGAGCGACGGAAATTGTATCCTTCCGAATTAGCGGGTGATTATCGATTGGATGGTGAAGTAGGCAAAAGGTTGAATCAGTTTATACCCATTCGTCATGT TCCTAAGATGAATGGAGAAATACCTTCATTTGATGAAGTAGCATCAGACCATGAGAGGCTTCTGAATAGATTGGAGGCATTTGGTTTTGCTGAGATCAAG GTTCAAGGAGATGGGAACTGTCAGTTTCGAGCATTATCAGATCAATTATACGGAACTCCTGATTGCCACAAAACTGTTAGAAAAGAGATTGTAAAACAGC TAAAATCCAACCCTGAGATATATGAAGGATATGTTCCCATGAAGTATCGTGAATACTTGAGCAACATGTCCAGATCTGGTGAATGGGGTGACCACGTCAC ATTGCAGGCAGCAGCTGATTCGTATGCTGTGAAAATACTCGTCATAACTTCATTCAAGGATACTTCCTCCATAGAGATTCTTCCACGAAAGAAGAAGCCA CAGAGAGTCATCTTCTTGAGTTTCTGGGCGGAGGTACATTACAATGCAATCTGTTTCCGCAATAGAGACACAGCGGGCTCGGAACCTGATAAGAAGAAGA AGAAACGAAGGTGGATATTTGGCAAGAAACACTGA
AA sequence Show only first row Show all	>Lus10026525 pacid=23164326 polypeptide=Lus10026525 locus=Lus10026525.g ID=Lus10026525.BGIv1.0 annot-version=v1.0 MAAARDHDSESDVIRWGMSLLEVDPPFYPGYYGGETIQNDHAYHHLPRHDDCEAEDNDEIIARTLQGDFSQLALRDSSRYSREQVAEDFSRPSYYGDSDW PTASTSNDSFNHDRRNEDSDDTVSSSLCSSPSYEERRKLYPSELAGDYRLDGEVGKRLNQFIPIRHVPKMNGEIPSFDEVASDHERLLNRLEAFGFAEIK VQGDGNCQFRALSDQLYGTPDCHKTVRKEIVKQLKSNPEIYEGYVPMKYREYLSNMSRSGEWGDHVTLQAAADSYAVKILVITSFKDTSSIEILPRKKKP QRVIFLSFWAEVHYNAICFRNRDTAGSEPDKKKKKRRWIFGKKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03330			Cysteine proteinases superfami...		Lus10026525 [exp]	0	1
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	3.5	0.9490
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	3.5	0.9467
AT3G22260			Cysteine proteinases superfami...		Lus10003816 [exp]	4.2	0.9452
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10041126 [exp]	5.7	0.9221
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	6.2	0.9567
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033718 [exp]	8.3	0.9257
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10029684 [exp]	8.7	0.9458
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	10.4	0.9401
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10032024 [exp]	11.4	0.9452
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10019458 [exp]	13.0	0.9386

Compare expression of checked genes

Lus10026525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.