Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36985 61 / 3e-14 DVL16, ROT4 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) AT3G55515 50 / 7e-10 DVL8, RTFL7 DEVIL 8, ROTUNDIFOLIA like 7 (.1) AT4G13395 46 / 1e-08 DVL10, RTFL12 DEVIL 10, ROTUNDIFOLIA like 12 (.1) AT2G39705 47 / 2e-08 RTFL8, DVL11 DEVIL 11, ROTUNDIFOLIA like 8 (.1) AT3G53232 46 / 2e-08 RTFL1, DVL20 DEVIL 20, ROTUNDIFOLIA like 1 (.1) AT1G07490 47 / 3e-08 RTFL3, DVL9 DEVIL 9, ROTUNDIFOLIA like 3 (.1) AT2G29125 46 / 6e-08 RTFL2, DVL13 DEVIL 13, ROTUNDIFOLIA like 2 (.1) AT4G35783 45 / 6e-08 RTFL6, DVL17 DEVIL 17, ROTUNDIFOLIA like 6 (.1) AT5G59510 45 / 2e-07 RTFL5, DVL18 DEVIL 18, ROTUNDIFOLIA like 5 (.1) AT1G13245 43 / 3e-07 RTFL17, DVL4 DEVIL 4, ROTUNDIFOLIA like 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040784 [exp] 50 / 2e-09 AT5G59510 84 / 1e-21 DEVIL 18, ROTUNDIFOLIA like 5 (.1) Lus10023399 [exp] 49 / 5e-09 AT2G39705 91 / 3e-25 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10002705 [exp] 48 / 6e-09 AT2G39705 86 / 1e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10001569 [exp] 47 / 5e-08 AT5G59510 79 / 8e-20 DEVIL 18, ROTUNDIFOLIA like 5 (.1) Lus10041259 [exp] 42 / 5e-07 AT1G53708 70 / 2e-17 ROTUNDIFOLIA like 9 (.1) Lus10028393 [exp] 42 / 7e-07 AT4G35783 60 / 5e-14 DEVIL 17, ROTUNDIFOLIA like 6 (.1) Lus10034272 [exp] 42 / 1e-06 AT1G13245 72 / 5e-19 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Lus10021966 [exp] 41 / 2e-06 AT1G53708 73 / 8e-19 ROTUNDIFOLIA like 9 (.1) Lus10041491 [exp] 41 / 3e-06 AT1G13245 66 / 1e-16 DEVIL 4, ROTUNDIFOLIA like 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125600 [exp] 67 / 6e-17 AT2G36985 75 / 3e-20 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.010G226250 [exp] 54 / 9e-12 AT2G36985 67 / 3e-17 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.008G035900 [exp] 53 / 2e-11 AT2G36985 66 / 1e-16 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.010G201700 [exp] 50 / 6e-10 AT2G39705 72 / 2e-18 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.008G057800 [exp] 50 / 6e-10 AT2G39705 84 / 8e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.001G242800 [exp] 50 / 1e-09 AT2G29125 71 / 4e-17 DEVIL 13, ROTUNDIFOLIA like 2 (.1) Potri.009G034300 [exp] 45 / 1e-07 AT2G29125 64 / 9e-15 DEVIL 13, ROTUNDIFOLIA like 2 (.1) Potri.001G161200 [exp] 43 / 3e-07 AT1G53708 76 / 1e-19 ROTUNDIFOLIA like 9 (.1) Potri.003G073900 [exp] 43 / 3e-07 AT1G53708 81 / 9e-22 ROTUNDIFOLIA like 9 (.1) Potri.010G129600 [exp] 42 / 3e-07 AT1G13245 75 / 1e-20 DEVIL 4, ROTUNDIFOLIA like 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08137 [flax] [poplar] DVL DVL family
Representative CDS sequence Show only first row Show all	>Lus10026526 pacid=23164218 polypeptide=Lus10026526 locus=Lus10026526.g ID=Lus10026526.BGIv1.0 annot-version=v1.0 ATGGAAAGGCATGCAGGGAGCTGCATAAACGAGTTATATGATGATCATCATCAGGAGATCAAGAGCAGTAGGGAGGCATGTTGCAAATCATCAACAACAA CAACAACAACGTTGGGGAAGAAATGCAAGCATCTGGTGAAGAAACAAAGGGCCAAGTTCTACATCGTTCGTCGTTGCATTGCTATGCTTGTCTGCTGGCA TGAACGTGACCCTGCCGACCCTTAA
AA sequence Show only first row Show all	>Lus10026526 pacid=23164218 polypeptide=Lus10026526 locus=Lus10026526.g ID=Lus10026526.BGIv1.0 annot-version=v1.0 MERHAGSCINELYDDHHQEIKSSREACCKSSTTTTTTLGKKCKHLVKKQRAKFYIVRRCIAMLVCWHERDPADP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Lus10026526 [exp]	0	1
AT2G04845			Acyl-CoA N-acyltransferases (N...		Lus10006397 [exp]	8.8	0.7961
AT3G47570			Leucine-rich repeat protein ki...		Lus10017028 [exp]	21.4	0.7314
AT2G03630			unknown protein		Lus10004647 [exp]	22.0	0.6464
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	41.3	0.7381
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10036009 [exp]	59.2	0.7359
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10036200 [exp]	72.0	0.7325
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10005589 [exp]	102.6	0.7111
AT4G03500			Ankyrin repeat family protein ...		Lus10026833 [exp]	108.9	0.7030
AT4G01590			unknown protein		Lus10006847 [exp]	124.8	0.6788
AT5G10420			MATE efflux family protein (.1...		Lus10015904 [exp]	125.9	0.7033

Compare expression of checked genes

Lus10026526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.