Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60770 653 / 0 ATNRT2.4 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) AT1G08090 640 / 0 LIN1, ACH1, NRT2;1AT, ATNRT2:1 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) AT5G60780 616 / 0 ATNRT2.3 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.3, nitrate transporter 2.3 (.1) AT3G45060 608 / 0 ATNRT2.6 ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, high affinity nitrate transporter 2.6 (.1) AT1G08100 591 / 0 NRT2;2AT, ACH2, ATNRT2.2 nitrate transporter 2.2 (.1) AT1G12940 494 / 1e-171 ATNRT2.5 nitrate transporter2.5 (.1) AT5G14570 351 / 8e-116 ATNRT2.7 high affinity nitrate transporter 2.7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030902 [exp] 485 / 4e-168 AT1G12940 751 / 0.0 nitrate transporter2.5 (.1) Lus10030588 [exp] 476 / 2e-164 AT1G12940 737 / 0.0 nitrate transporter2.5 (.1) Lus10016120 [exp] 468 / 2e-163 AT1G08090 533 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10013042 [exp] 417 / 4e-141 AT1G12940 635 / 0.0 nitrate transporter2.5 (.1) Lus10008767 [exp] 300 / 1e-96 AT5G14570 483 / 1e-168 high affinity nitrate transporter 2.7 (.1) Lus10016121 [exp] 286 / 3e-91 AT1G08090 583 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Lus10021444 [exp] 276 / 2e-89 AT5G60770 307 / 1e-101 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1) Lus10025421 [exp] 95 / 1e-22 ND 193 / 1e-59 Lus10016119 [exp] 79 / 4e-17 AT5G60770 177 / 4e-54 ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G008600 [exp] 665 / 0 AT1G08090 832 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.009G008500 [exp] 664 / 0 AT1G08090 830 / 0.0 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1) Potri.T124708 [exp] 493 / 6e-171 AT1G12940 684 / 0.0 nitrate transporter2.5 (.1) Potri.T124608 [exp] 488 / 2e-169 AT1G12940 688 / 0.0 nitrate transporter2.5 (.1) Potri.015G081300 [exp] 483 / 3e-167 AT1G12940 698 / 0.0 nitrate transporter2.5 (.1) Potri.012G087700 [exp] 450 / 9e-155 AT1G12940 640 / 0.0 nitrate transporter2.5 (.1) Potri.001G348300 [exp] 395 / 3e-133 AT5G14570 509 / 1e-178 high affinity nitrate transporter 2.7 (.1) Potri.004G213716 [exp] 98 / 5e-25 AT1G08090 105 / 1e-28 LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10026527 pacid=23164418 polypeptide=Lus10026527 locus=Lus10026527.g ID=Lus10026527.BGIv1.0 annot-version=v1.0 ATGGATGGAAGTCGCGACAATAACGAAGGTGGCAGTAATAACAAGGCCGCCTTGGCCTTGGCCACCTCTTCGTTAGCGCCTCCACTTTTCAAGGTCCCGG TCGATTCAGAGCACAAAGCCAAAACATTCAACCCGCTCTCGATCTCCCATCCTCACATGTCAACGTTCCACTTGGCGTGGCTCTCATTTTTCACCACTTT CCTGTCCACCTTCGCCGCGGCCCCACTGGTCCCCATCATCCGGGACGACCTCAACCTGACCAAATCGGACATCGGGTCGGCCTCCATCGCGTCTGTCTCG GGGAGCATCTTTTCCAGGCTGGTCATGGGGGCGGCCTGCGACCTGCTGGGCCCGCGGTACGCCGCCGCGTTCCTGATAATGCTGACCGCGCCCACCGTGT TTTGCATGGCGATGGTGCGGTCAGCGGGAGGGTACGTGGCGGTGAGGTTCATGATCGGCTTCTCGCTGGCGACATTCGTGTCGTGCCAGTACTGGATGAG CACGATGTTCAACGGGAAGATCGTCGGGGTGGTGAACGGGACGGCGGCCGGGTGGGGGAACATGGGGGGTGGGGTGACTCAGCTGGTGATGCCGTTGGTG TTTGAGGTGATAAAGAGGTGCGGTGCGACGCCGTTTGTGGCGTGGAGGATAGCGTTTTATGTTCCAGGGATGTTGCATGTGGTGATGGGGATCTTGGTAT TGAGCTTGGGACAGGATTTGCCTGATGGTAACCTTGGTGCTTTGCAGAAGAAAGGCGATGTTCATAAGGATAAACTGCTCAAGGTGATATGGTGTGCGGT TACAAATTATAGAACGTGGATCTTCTTCCTTTTGTATGGCATGTCTCTCGGAGTAGAATTAACCACCGATAATGTCATCGCTGAATACTTCTTCGACAAG TTCAACTTAAAGCTCCACACAGCGGGAACCATAGCCGCCACATTCGGAATGGCTAACATTTTCGCCCGTCCACTTGGCGGACTCATATCCGACCTGACAT CACGCCACGTCGGAATGCGGGGCCGCCTGTGGGCCCTGTACATCCTCCAAACATTAGGAGGAATCTTCTGCATCTGCTTGGGCCGGGCCGAAACCCTCCT TTCCTCCGTAGCCTTCATGATCCTATTCTCCATCGGGGCCCAGTCCGCATGTGGGGCCACCTTCGGCATAATCCCCTTCATCTCCCGTCGCTCACTCGGG GTAATCTCGGGTCTGACCGGAGCCGGCGGGAACTTCGGATCCGGGTTGACCCAGTACCTGTTCTTCACCAGGTCCACGGAGCTCTCCACCTCCTCAGGGA TTACTCTAATGGGAGTGATGATCGTGGCGTGCACCCTGCCTGTGGCGGCGGTGCACTTCCCGCAGTGGGGGAGCATGTTTTTCCCGGCGACGAGTAAGGA TTCGGAGAAGGGGAACGAGGAGTATTATTACGGGTCGGAGTGGAGCGTAGACGAGAAGGAGAAAGGGCTTCACCAAGGGAGCCTCAAGTTTGCAGAGAAT AGTAGGTCGGAGAGGGGACGCCGTGTCGTATCGGCTGCTTCTTCAACAACGCCTCCCGAAATTGACCCATGA
AA sequence Show only first row Show all	>Lus10026527 pacid=23164418 polypeptide=Lus10026527 locus=Lus10026527.g ID=Lus10026527.BGIv1.0 annot-version=v1.0 MDGSRDNNEGGSNNKAALALATSSLAPPLFKVPVDSEHKAKTFNPLSISHPHMSTFHLAWLSFFTTFLSTFAAAPLVPIIRDDLNLTKSDIGSASIASVS GSIFSRLVMGAACDLLGPRYAAAFLIMLTAPTVFCMAMVRSAGGYVAVRFMIGFSLATFVSCQYWMSTMFNGKIVGVVNGTAAGWGNMGGGVTQLVMPLV FEVIKRCGATPFVAWRIAFYVPGMLHVVMGILVLSLGQDLPDGNLGALQKKGDVHKDKLLKVIWCAVTNYRTWIFFLLYGMSLGVELTTDNVIAEYFFDK FNLKLHTAGTIAATFGMANIFARPLGGLISDLTSRHVGMRGRLWALYILQTLGGIFCICLGRAETLLSSVAFMILFSIGAQSACGATFGIIPFISRRSLG VISGLTGAGGNFGSGLTQYLFFTRSTELSTSSGITLMGVMIVACTLPVAAVHFPQWGSMFFPATSKDSEKGNEEYYYGSEWSVDEKEKGLHQGSLKFAEN SRSERGRRVVSAASSTTPPEIDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10026527 [exp]	0	1
AT4G16790			hydroxyproline-rich glycoprote...		Lus10007846 [exp]	8.0	0.7955
AT5G06850			C2 calcium/lipid-binding plant...		Lus10021030 [exp]	14.9	0.7738
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	23.9	0.7500
AT5G06850			C2 calcium/lipid-binding plant...		Lus10023823 [exp]	26.3	0.7677
					Lus10023424 [exp]	28.0	0.7241
AT4G16790			hydroxyproline-rich glycoprote...		Lus10004758 [exp]	29.3	0.7453
AT3G12350			F-box family protein (.1.2)		Lus10018673 [exp]	45.5	0.6399
AT5G24090		ATCHIA	chitinase A (.1)		Lus10010137 [exp]	53.7	0.7114
AT2G46640			unknown protein		Lus10005993 [exp]	54.3	0.7040
AT3G47570			Leucine-rich repeat protein ki...		Lus10030846 [exp]	57.4	0.6560

Compare expression of checked genes

Lus10026527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.