Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36960 527 / 2e-178 MYB TKI1 TSL-kinase interacting protein 1 (.1.2.3) AT4G39380 58 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013816 [exp] 1304 / 0 AT2G36960 660 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Lus10010230 [exp] 185 / 2e-55 AT2G36960 68 / 2e-14 TSL-kinase interacting protein 1 (.1.2.3) Lus10033530 [exp] 76 / 4e-14 AT4G39380 216 / 2e-64 unknown protein Lus10020841 [exp] 52 / 4e-07 AT4G39380 99 / 1e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125400 [exp] 752 / 0 AT2G36960 680 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Potri.016G091700 [exp] 751 / 0 AT2G36960 665 / 0.0 TSL-kinase interacting protein 1 (.1.2.3) Potri.005G086800 [exp] 85 / 2e-17 AT4G39380 245 / 2e-76 unknown protein Potri.007G077700 [exp] 83 / 1e-16 AT4G39380 245 / 2e-76 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10026528 pacid=23164216 polypeptide=Lus10026528 locus=Lus10026528.g ID=Lus10026528.BGIv1.0 annot-version=v1.0 ATGGAGCCATTGGTATCCTTGGGCTCTCAGGCACTCCTTTATACAGAGACTGCAGTTCAGGATCAAAGTCCTTGTGTTCTGTCATCCACTCCGGATCATG TTGAACCACAACCACCTGTGAAAAAGCGAACCAGGCAGTGGGCTGCTTGGACACGTCAAGAGGAGGAAAGATTCTTTACTGCACTGCGACAATTTGGCAA GAATTTTGAGAAGATCACTAATCGTGTCCAGAGTAAAAACAAAGATCAGGTTGAAATGCTACAAGTCCGCCATTATTACTATCGTTTGGTGAAGCGTATG AACAAATATCTTGGTCCTGGACTGTGTCTGGATGCGAAGAATTCTAAAGATACCAATGCTGCAATGCTTCGATGGTGGTCATTATTGGAGAAATACAGTT GCAAAGCCTCAAAGCTTCACCTGAAGCCACGGAGATTCAAGAGTTTCTTAGAGGCCTTGGAGAACCAATTGATAAAAGACCGAAAGAAGAACGAAAGAAA GCGGCCTTTGCAAGGAGAAAGTGCTTCTCCAACAACGACCAGCTCTGTAACCAAACAGAATAGAGCACCAGCTCAAGATGCTGTGATAGTTAAACTGGTT CTCATAGACGGTCAAAACATACAAAAGTTAGGATCCAGTAAAGGATCACTGAGGCGCAATGCTAGTGTAGGTGTCATGCGGAATACCAATAAGGGATCCC CTGGGTTGATGAAACCTCCTCGACAAAAGCGGAAACAAAGTGCAGTCACTCCAGCTGCATACCGAAAGTGGGAAAAGGCTGCTATTGCTGGGGTTTCATT GGTTGCTGATGCTGCTGAGCATTTGGAGCTGACAGCAATTGATAAGGATGTGAATGCTGACCAGGCAGAAAGGGGTCTTGACCCTGTTCATAAAGAATTG GTCCCTCTTCCGGTTTCTTCACATCACCAGACTGGTGATAACAATGTCTGCAGTAATATGAAGCTTAAGCTTCAGTTCTTCCCAATTGATGATATGACTA GAAGAGCCTTAGAACTGAGATGGACTCAAGATACTACTGCCAGTGCAGCAGATATATATTATTCACTTGGTAACCCACCGGTATTTCGCTTAAGATATGG TTGGTTCTCTGATTCCGGACTTCAATCCATGCTGTTGCAAGCACCTTCAATATCAAGATGTACACCATCTGGGAATGATATTGACACAAATAGCAATACA CAGAAGGAACATTCTACGTCTGCATCAACAAGTTTTGGCTCTCAGAAACTTGTAGTTGTCTCCCAGTATCAACCATCCTTGATAAATAAAACTTCTGCTC CCAGTAGTATTTCGTCAAATCCTTTGCCAGCCTTACCATGTATAGGAACGGCCACAAATGATGGGACTAATATAAAGCCACTAGAAGATGGGCTTGCTAT TTGTATGCAAAATACGAAGGATGAGCTGAGACTGAGCAATGGTACTGCATTATCTGCTGGAGAATGGGCCGATAGCCTCACCAACATCAGTGTTGGTGAT CTACTATCCGAAGTGTCTCAAAATGATCAATGTCTTGAGCAAGTCCCCTTCAGTTGTGATTCATTCGATGCCGCTATTGCTGCCCATATATCAAAACATC AAAACAAGTTGGGATTTCCATCATTAGTGCAACCACAGACATCATCTATCTGGGATGCAGATGAAACATGTGATGCCTTCTCATTTCAAAAGAATCCTAT TTCTCATCAACAAGTGTCGAGGACATCCAATGCGACTTCAACAACAGCTGGGAAACAGGATTTGCCTAATTTGGGAGGACAATTGGGCTACTCTGCTGAT GGAGATCCAATGGATGAAGAAGCCATGGATAACCCCAGAAAAGATTTCAGTAGACTTTCCGACGTCTATTGGCCTGACTCACTTGGGGCATTAGATTTGG ACATACCATCGTGTAAATACGACAGCGAGGAGATAGTACTAAACAATAGCCTTGGTGGGTTGAACCGTCTTATAGCCAGCAGTTTGGATGCGTTTCATAA CTGCTCCTTCTTAGGGCTGGAGAAGAAAGATTCAGCATCGACGGTGGAAGCGCGAGATAGTACCTCATTTTCAGGCTTTAAAGTTGGCAGTGGGATGTGA
AA sequence Show only first row Show all	>Lus10026528 pacid=23164216 polypeptide=Lus10026528 locus=Lus10026528.g ID=Lus10026528.BGIv1.0 annot-version=v1.0 MEPLVSLGSQALLYTETAVQDQSPCVLSSTPDHVEPQPPVKKRTRQWAAWTRQEEERFFTALRQFGKNFEKITNRVQSKNKDQVEMLQVRHYYYRLVKRM NKYLGPGLCLDAKNSKDTNAAMLRWWSLLEKYSCKASKLHLKPRRFKSFLEALENQLIKDRKKNERKRPLQGESASPTTTSSVTKQNRAPAQDAVIVKLV LIDGQNIQKLGSSKGSLRRNASVGVMRNTNKGSPGLMKPPRQKRKQSAVTPAAYRKWEKAAIAGVSLVADAAEHLELTAIDKDVNADQAERGLDPVHKEL VPLPVSSHHQTGDNNVCSNMKLKLQFFPIDDMTRRALELRWTQDTTASAADIYYSLGNPPVFRLRYGWFSDSGLQSMLLQAPSISRCTPSGNDIDTNSNT QKEHSTSASTSFGSQKLVVVSQYQPSLINKTSAPSSISSNPLPALPCIGTATNDGTNIKPLEDGLAICMQNTKDELRLSNGTALSAGEWADSLTNISVGD LLSEVSQNDQCLEQVPFSCDSFDAAIAAHISKHQNKLGFPSLVQPQTSSIWDADETCDAFSFQKNPISHQQVSRTSNATSTTAGKQDLPNLGGQLGYSAD GDPMDEEAMDNPRKDFSRLSDVYWPDSLGALDLDIPSCKYDSEEIVLNNSLGGLNRLIASSLDAFHNCSFLGLEKKDSASTVEARDSTSFSGFKVGSGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10023487 [exp]	1.4	0.9156
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	2.2	0.9051
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	2.2	0.9325
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	2.4	0.9112
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10020843 [exp]	3.7	0.8969
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	5.3	0.9088
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10021888 [exp]	5.5	0.8938
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10014653 [exp]	7.5	0.8965
AT1G58025			DNA-binding bromodomain-contai...		Lus10037368 [exp]	7.5	0.8568
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	8.5	0.8969

Compare expression of checked genes

Lus10026528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.