Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34340 265 / 1e-86 TAF8 TBP-associated factor 8 (.1) AT5G15570 165 / 1e-47 Bromodomain transcription factor (.1) AT3G02160 160 / 1e-45 Bromodomain transcription factor (.1) AT1G31240 94 / 5e-22 Bromodomain transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013818 [exp] 663 / 0 AT4G34340 272 / 3e-89 TBP-associated factor 8 (.1) Lus10040612 [exp] 105 / 3e-26 AT1G31240 122 / 1e-33 Bromodomain transcription factor (.1) Lus10018295 [exp] 98 / 2e-23 AT1G31240 126 / 6e-35 Bromodomain transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125200 [exp] 431 / 1e-151 AT4G34340 198 / 2e-60 TBP-associated factor 8 (.1) Potri.016G092000 [exp] 424 / 9e-149 AT4G34340 246 / 6e-79 TBP-associated factor 8 (.1) Potri.017G094900 [exp] 263 / 2e-85 AT5G15570 233 / 3e-73 Bromodomain transcription factor (.1) Potri.004G116200 [exp] 251 / 1e-80 AT5G15570 237 / 8e-75 Bromodomain transcription factor (.1) Potri.015G118200 [exp] 111 / 2e-28 AT1G31240 137 / 4e-39 Bromodomain transcription factor (.1) Potri.012G119500 [exp] 101 / 2e-24 AT1G31240 141 / 2e-40 Bromodomain transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10406 [flax] [poplar] TAF8_C Transcription factor TFIID complex subunit 8 C-term CL0012 [flax] [poplar] Histone PF07524 [flax] [poplar] Bromo_TP Bromodomain associated
Representative CDS sequence Show only first row Show all	>Lus10026530 pacid=23164250 polypeptide=Lus10026530 locus=Lus10026530.g ID=Lus10026530.BGIv1.0 annot-version=v1.0 ATGAGCAATGGAGGTGAAGCGAGTACACCGACAAGATTGAAAGCCGACGAATTTGGATATGCGGTCGCGAGAAAGGCTGTAGCTCAGGTCTGCGAAAATG TTGGCTTCGACGGCTCAAAGGAGTCGGCTTTGGATGCTCTGACTGACGTCACCCTCCGGTACCTCCGCGACTTGGGAAAGACGGCGAGCTCCAACGCCAA TTTATGCGGCAGAACGGAATGCACCATCTTCGACGTGGTTAGAGGTTTGGAAGATATTAACGCCACTCAGGGATTTCCAGGTGCATATAACTCTAGCGGG TGTCTTGTTAGTTCTGGCACCATCAGAGAGCTGGTTGATTATGTAGGTTCTAATGAAGAGATCCCCTTTGCACAACCGGTGCCTCAGTTCCCCATTGTTC GACCTAGCAAGTTGATTCCTAGTTTTCAGAAAATGAACGAAACCCCTCCTGGGAAGCATGTTCCTGATTGGTTGCCAGCACTTCCGGATCAGCACACGTA TGTTCATACCCCGATGTGGAACGAGAGGGATTCGGATCCGAGAGCTGATAAGATTGAGCAAGCTAAGCAAAGGAGGAAGGCCGAGACGGCATTGTTGAGC CTTCAGCAGAGGCTGGTGAATCATAACTCAGTAGCAGGTGCTGGATCTTCAGGTGTAGTAAGAAATGCTGAGGAGTTGGGTGTAGCTGATGGAAATCCTT TTCTTAGGAAGGCTTTGAATCCAGGGGAGAAAGACGTGTCTCTGGTTATGGTACCGAATAAGCTGGCCAATCATGTTTCTATAATGGAGGCATTTGCTCC AGCGATTGAGGCGGCGAAAGAAGTAGGGGTTAATGAAGAAGAAGAAGAAGGTGGGGAAGGTGAGAAGAAGTTGCTTCTAGAGAAGAGGCCTAGTGTGAGT TTTAGCTTGAAGACTAGGAAGAAATTGTTAGCTGAAGAGTCGTTAAGTTTGCACATTTCGAAGAAGAGCCAAGGAAGAAGAACAGGGGGCCCGAATTCTT TAGGAAAGGCCGATGAGAGGGATGATAAGAAGAGGAGAGCAGAGTATATACTTAGGCAGTCCATGGAAAAACCACAAGAATTCACTCATTTGTAA
AA sequence Show only first row Show all	>Lus10026530 pacid=23164250 polypeptide=Lus10026530 locus=Lus10026530.g ID=Lus10026530.BGIv1.0 annot-version=v1.0 MSNGGEASTPTRLKADEFGYAVARKAVAQVCENVGFDGSKESALDALTDVTLRYLRDLGKTASSNANLCGRTECTIFDVVRGLEDINATQGFPGAYNSSG CLVSSGTIRELVDYVGSNEEIPFAQPVPQFPIVRPSKLIPSFQKMNETPPGKHVPDWLPALPDQHTYVHTPMWNERDSDPRADKIEQAKQRRKAETALLS LQQRLVNHNSVAGAGSSGVVRNAEELGVADGNPFLRKALNPGEKDVSLVMVPNKLANHVSIMEAFAPAIEAAKEVGVNEEEEEGGEGEKKLLLEKRPSVS FSLKTRKKLLAEESLSLHISKKSQGRRTGGPNSLGKADERDDKKRRAEYILRQSMEKPQEFTHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10026530 [exp]	0	1
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	1.0	0.9259
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	2.8	0.8753
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	2.8	0.8834
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	3.9	0.8821
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10017633 [exp]	3.9	0.8661
AT5G49525			unknown protein		Lus10011181 [exp]	6.0	0.8476
AT5G65250			unknown protein		Lus10000635 [exp]	6.5	0.8597
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10023839 [exp]	7.5	0.8260
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10000093 [exp]	10.4	0.8277
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10022023 [exp]	13.0	0.8367

Compare expression of checked genes

Lus10026530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.