Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09870 88 / 3e-23 SAUR-like auxin-responsive protein family (.1) AT2G28085 61 / 9e-13 SAUR-like auxin-responsive protein family (.1) AT4G38860 52 / 2e-09 SAUR-like auxin-responsive protein family (.1) AT5G20810 52 / 5e-09 SAUR-like auxin-responsive protein family (.1.2) AT1G56150 51 / 5e-09 SAUR-like auxin-responsive protein family (.1) AT1G20470 51 / 6e-09 SAUR-like auxin-responsive protein family (.1) AT4G34770 50 / 1e-08 SAUR-like auxin-responsive protein family (.1) AT5G10990 50 / 1e-08 SAUR-like auxin-responsive protein family (.1) AT3G12830 50 / 2e-08 SAUR-like auxin-responsive protein family (.1) AT1G19840 50 / 2e-08 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013819 [exp] 239 / 9e-83 AT3G09870 92 / 7e-25 SAUR-like auxin-responsive protein family (.1) Lus10004014 [exp] 187 / 2e-62 AT3G09870 101 / 1e-28 SAUR-like auxin-responsive protein family (.1) Lus10030263 [exp] 179 / 4e-59 AT3G09870 100 / 4e-28 SAUR-like auxin-responsive protein family (.1) Lus10001398 [exp] 122 / 3e-36 AT3G09870 97 / 9e-27 SAUR-like auxin-responsive protein family (.1) Lus10023012 [exp] 119 / 2e-35 AT3G09870 97 / 5e-27 SAUR-like auxin-responsive protein family (.1) Lus10001397 [exp] 79 / 1e-19 AT2G28085 69 / 8e-16 SAUR-like auxin-responsive protein family (.1) Lus10026532 [exp] 73 / 1e-17 AT3G09870 64 / 3e-14 SAUR-like auxin-responsive protein family (.1) Lus10021435 [exp] 71 / 2e-16 AT2G28085 108 / 4e-31 SAUR-like auxin-responsive protein family (.1) Lus10016130 [exp] 71 / 2e-16 AT2G28085 111 / 2e-32 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092400 [exp] 119 / 1e-35 AT3G09870 108 / 8e-32 SAUR-like auxin-responsive protein family (.1) Potri.006G125100 [exp] 114 / 1e-33 AT3G09870 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.010G226400 [exp] 81 / 3e-20 AT2G28085 51 / 3e-09 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 56 / 5e-11 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.005G237200 [exp] 55 / 1e-10 AT1G75580 164 / 5e-54 SAUR-like auxin-responsive protein family (.1) Potri.002G024300 [exp] 54 / 3e-10 AT1G75580 170 / 2e-56 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 55 / 4e-10 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 53 / 9e-10 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 53 / 1e-09 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.004G164300 [exp] 53 / 2e-09 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10026531 pacid=23164362 polypeptide=Lus10026531 locus=Lus10026531.g ID=Lus10026531.BGIv1.0 annot-version=v1.0 ATGTTCAACAACAGCGATGACGAAAGCATCCGAGGGTTGATGCTGCTAAAGTTCTTCACAAGAATGCTGCAAAGGACACTGATGATGATGACATCCAGAT CAGGAGGGCAGAAGCTGCAGAAAACCAGCACTACTGGAGAGTATGAAGAAGACAAAGAAGGGATGAAGGAAGTTCCAAACGATGTGAAGAGAGGACAGTT TGCCGTGACAGCAACCAAAGGTGGGAAGCCAAAGAGGTTCATTGTCGAGTTGGATGACCTCAATGACCCTGATTTCCTCACCTTGCTCGAACTGTCTGAG GAAAAATTCGGGTTTGGCCAGGCAGGTGTGCTTGAGGTCCCTTGTTACCCTCTGGAGCTTCAGAAGGTTCTACGAGGTGGCAAAATCAGAAGGGCAAGTG CACAATGGTAG
AA sequence Show only first row Show all	>Lus10026531 pacid=23164362 polypeptide=Lus10026531 locus=Lus10026531.g ID=Lus10026531.BGIv1.0 annot-version=v1.0 MFNNSDDESIRGLMLLKFFTRMLQRTLMMMTSRSGGQKLQKTSTTGEYEEDKEGMKEVPNDVKRGQFAVTATKGGKPKRFIVELDDLNDPDFLTLLELSE EKFGFGQAGVLEVPCYPLELQKVLRGGKIRRASAQW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09870			SAUR-like auxin-responsive pro...		Lus10026531 [exp]	0	1
AT3G45070			P-loop containing nucleoside t...		Lus10041611 [exp]	4.4	0.8438
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10009562 [exp]	10.9	0.8382
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10035055 [exp]	11.5	0.8123
AT3G47570			Leucine-rich repeat protein ki...		Lus10030852 [exp]	13.1	0.8349
AT5G54010			UDP-Glycosyltransferase superf...		Lus10003154 [exp]	17.7	0.7463
AT2G23945			Eukaryotic aspartyl protease f...		Lus10002275 [exp]	19.1	0.7538
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Lus10036068 [exp]	25.5	0.8018
					Lus10011890 [exp]	25.9	0.8142
AT4G38840			SAUR-like auxin-responsive pro...		Lus10038191 [exp]	27.2	0.8035
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10009075 [exp]	30.2	0.8153

Compare expression of checked genes

Lus10026531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.