Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03370 111 / 3e-31 acylphosphatase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013820 [exp] 254 / 1e-87 AT5G03370 135 / 1e-40 acylphosphatase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093000 [exp] 123 / 2e-35 AT5G03370 116 / 9e-33 acylphosphatase family (.1) Potri.006G124966 [exp] 111 / 2e-32 AT5G03370 107 / 3e-31 acylphosphatase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0622 [flax] [poplar] Acylphosphatase PF00708 [flax] [poplar] Acylphosphatase Acylphosphatase
Representative CDS sequence Show only first row Show all	>Lus10026533 pacid=23164378 polypeptide=Lus10026533 locus=Lus10026533.g ID=Lus10026533.BGIv1.0 annot-version=v1.0 ATGTCAATTCCTCTGACTGTAAGCATTAGAACGAGATTTCTACTATCTCGCTCGAAGATTCCCGAGCCATGGCATATGGGTGTTGCTAGACTCTGTTTTC TCACTAGCCTGGGATCTCCTTCACTTTCTCCTCTTCCCCTTCACAATCGTTTTCTTCCATCTCATCCTCCCCTAATTTGCTCTTCCTTTCAATCTCGCCT TCGACCTTCTCTGCTCATCTCTGCCTCCATGACTTCTTCCGCTTCCTCCGATCTCAAGACTGTGCGGGTTGTGGTCAAAGGCAGGGTGCAAGGAGTGTTC TACAGGGACTGGACAGTGGCTAGCGCGACGGAATTAGGGCTTAAAGGCTGGGTGAGGAATCGGAGGGATGGCACCGTCGAGGCTTTGTTCTCCGGGGAGT CCGGTAAGGTCGAGAAGATGGAGCAGAGGTGCCGCCGTGGCCCTCCTTCTGCCGTTGTAACTGGGCTCGACGTTTTCCCCTGCGATGAAGACCCCGGAAC TGGATTTGATCGTAAACCAACGGTTTGA
AA sequence Show only first row Show all	>Lus10026533 pacid=23164378 polypeptide=Lus10026533 locus=Lus10026533.g ID=Lus10026533.BGIv1.0 annot-version=v1.0 MSIPLTVSIRTRFLLSRSKIPEPWHMGVARLCFLTSLGSPSLSPLPLHNRFLPSHPPLICSSFQSRLRPSLLISASMTSSASSDLKTVRVVVKGRVQGVF YRDWTVASATELGLKGWVRNRRDGTVEALFSGESGKVEKMEQRCRRGPPSAVVTGLDVFPCDEDPGTGFDRKPTV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03370			acylphosphatase family (.1)		Lus10026533 [exp]	0	1
AT3G05500			Rubber elongation factor prote...		Lus10015171 [exp]	1.4	0.8581
AT3G14460			LRR and NB-ARC domains-contain...		Lus10006793 [exp]	3.5	0.8387
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	4.2	0.8467
AT4G35220			Cyclase family protein (.1)		Lus10014092 [exp]	5.0	0.8438
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10017248 [exp]	5.3	0.8168
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	6.6	0.8449
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	8.7	0.8503
AT1G71840			transducin family protein / WD...		Lus10033710 [exp]	9.5	0.8146
AT1G71780			unknown protein		Lus10040812 [exp]	10.0	0.8185
AT2G23780			RING/U-box superfamily protein...		Lus10022492 [exp]	10.2	0.8352

Compare expression of checked genes

Lus10026533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.