Plant FIBer expression Database

Lus10026534 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03450 316 / 4e-101 Transducin/WD40 repeat-like superfamily protein (.1)
AT5G03750 57 / 1e-09 unknown protein
AT5G37230 47 / 5e-06 RING/U-box superfamily protein (.1)
AT1G51930 44 / 3e-05 RING/U-box superfamily protein (.1)
AT5G37270 44 / 8e-05 RING/U-box superfamily protein (.1)
AT5G48655 44 / 8e-05 RING/U-box superfamily protein (.1.2.3)
AT3G58720 44 / 0.0001 RING/U-box superfamily protein (.1.2)
AT5G37250 43 / 0.0002 RING/U-box superfamily protein (.1)
AT3G05870 40 / 0.0004 APC11 anaphase-promoting complex/cyclosome 11 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013821
[exp]
783 / 0 AT5G03450 459 / 1e-154 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G122800
[exp]
401 / 4e-134 AT5G03450 473 / 6e-160 Transducin/WD40 repeat-like superfamily protein (.1)
Potri.010G228000
[exp]
246 / 3e-74 AT5G03450 357 / 8e-115 Transducin/WD40 repeat-like superfamily protein (.1)
Potri.003G148300
[exp]
44 / 0.0001 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3)
Potri.017G037701
[exp]
39 / 0.0003 AT3G05870 123 / 5e-39 anaphase-promoting complex/cyclosome 11 (.1.2)
Potri.016G058300
[exp]
42 / 0.0007 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10026534 pacid=23164244 polypeptide=Lus10026534 locus=Lus10026534.g ID=Lus10026534.BGIv1.0 annot-version=v1.0
ATGGTGGAACCCTACAGCTCCGATGAAGAGCTGGCGGAACCGGTAGTAGAATTATCAGGAGGCAGCTCCGACTCCGAAGGAGAGGAATCTGACTCAGAAG
ATGAGGAAGCGGAGGAAGGCTTCATTCCAATTGATGTCTCGCCATCTAGGGTTTCAGACCACGATGTTCCTTCCAGTTCCAGTAAGGTGAGGAGTGTTTA
TGTCGAAGACGAGGCAACTAAGAGAAGAAGAGTGGATGATGAGGTATGCTCGTCGAATACGGACGAAGGAAGACATGGTTCTCAAGGTAGCCAGTGGAAT
CGTGCTGAAATCGAAGGCTTGTTTTGCTCAATTTGCATGGAAGCCTGGACTAGTGAAGGAAATCACCACATCTGCTGTCTTCCTTGGGGCCATCTCTTTG
GGTTGTCTTGCATTGAAAAATGGTTAAAACAAAAGCGAAGTTCTGGCAAGTGCCCTCAATGCAACAGGAAATGCACATTGAAAGAAGTGAGGAAACTTTT
TGCGCCTAGGATTGCCGTGGTGGACGAAGAATCCCAAAAGAGAATTCATTTCCTCGAGGCTAAGTGTGCTTCTCTCGAAAAGAAGGGAGCTGATTGGTAC
AAGAAAGAAGCTGCATGGCGTAAGCAGGAGACTGAATTGCAAGGGAAAGTTAAACTGCTTAAGGAGAGGACAGCTTCCTTGGAGCGTTTATTAGATGATT
TGCAGAACAAACCGACAGGATTACTCTCTGCTTCTAGAGGCCAACATGTACCATTTGTAGCTATAAATGTCCTTCAAGACTTGTATGGTATCTTGTTCAT
CGCGCTTCATTTACTGGTCCGTGTAGATAATACTGCTACTTCAAACTTCAGCATGCAAGGCTCTTCTGGTAGCTTTGAGTTACAGGGGGAGCTGAATGTG
GAGGGTGGACGCTTATTTGACATAAATATCTCAAGTCAAACATTATTAGTTGCAAGAAGACCACCTCAGGTGGGTGGATCTCATGTTACCAAGATAAATT
TGATGCCTCCACATGGAACCAGCAACATCATTCTTCCATCTAGCACAGGCACGATCAAAGACTTGCATTTCTGCCCACGTCTGATTGTTTCTTGCCTTCA
TAACTGTTTGGACAGCAGCAACATCACCCTTTCATATCAGCTACCATATCCTGCTTGGTCATGTTCGTGGGACCTAAACAGTCCACATCATATTTACGCC
GGCTTACAGAATGGCATGTTGTTGGCATTTGGCATTCGCCAAACAGCACAGCTTCTGGAGTCTAGGCTGGGGCTTTCAAGGAATCCAATTCATACAATAC
ATTCACTTGACTATAATGGTACTTTACCCCCAAATGTTAGAGCAGTGCTGTCTGCTTCCTCTCTGGTTGCTCGGCGACTTCAACCCCAGAGGAGCTTCAT
CTCCGACGTAAAATATGCTGGCAACCATAGCCAACGGTGTGCTTGGGTGTTTAAGTGA
AA sequence
>Lus10026534 pacid=23164244 polypeptide=Lus10026534 locus=Lus10026534.g ID=Lus10026534.BGIv1.0 annot-version=v1.0
MVEPYSSDEELAEPVVELSGGSSDSEGEESDSEDEEAEEGFIPIDVSPSRVSDHDVPSSSSKVRSVYVEDEATKRRRVDDEVCSSNTDEGRHGSQGSQWN
RAEIEGLFCSICMEAWTSEGNHHICCLPWGHLFGLSCIEKWLKQKRSSGKCPQCNRKCTLKEVRKLFAPRIAVVDEESQKRIHFLEAKCASLEKKGADWY
KKEAAWRKQETELQGKVKLLKERTASLERLLDDLQNKPTGLLSASRGQHVPFVAINVLQDLYGILFIALHLLVRVDNTATSNFSMQGSSGSFELQGELNV
EGGRLFDINISSQTLLVARRPPQVGGSHVTKINLMPPHGTSNIILPSSTGTIKDLHFCPRLIVSCLHNCLDSSNITLSYQLPYPAWSCSWDLNSPHHIYA
GLQNGMLLAFGIRQTAQLLESRLGLSRNPIHTIHSLDYNGTLPPNVRAVLSASSLVARRLQPQRSFISDVKYAGNHSQRCAWVFK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G03450 Transducin/WD40 repeat-like su... Lus10026534
[exp]
0 1
AT5G43680 unknown protein Lus10004356
[exp]
1.0 0.8383
AT3G25840 Protein kinase superfamily pro... Lus10021688
[exp]
2.8 0.8164
AT5G08020 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA... Lus10036312
[exp]
3.6 0.7697
AT2G39260 binding;RNA binding (.1) Lus10040364
[exp]
6.2 0.8214
AT2G22300 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTI... Lus10041704
[exp]
6.8 0.8240
AT1G09730 Cysteine proteinases superfami... Lus10000917
[exp]
9.2 0.8112
AT3G52120 SWAP (Suppressor-of-White-APri... Lus10015703
[exp]
9.5 0.8009
AT1G01040 SIN1, EMB76, EM... SHORT INTEGUMENTS 1, EMBRYO DE... Lus10030177
[exp]
10.1 0.7614
AT5G22450 unknown protein Lus10020607
[exp]
11.2 0.8106
AT5G25060 RNA recognition motif (RRM)-co... Lus10026892
[exp]
13.7 0.7888

Lus10026534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.