Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36870 365 / 4e-127 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT3G44990 328 / 1e-112 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT1G32170 201 / 3e-62 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT1G10550 192 / 5e-59 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT2G01850 192 / 8e-59 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT4G18990 188 / 3e-57 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT1G14720 187 / 8e-57 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT3G25050 180 / 1e-54 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT4G14130 174 / 1e-52 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT3G23730 173 / 5e-52 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001396 [exp] 386 / 2e-135 AT2G36870 460 / 8e-165 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10023009 [exp] 385 / 5e-135 AT2G36870 466 / 3e-167 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 374 / 1e-130 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026535 [exp] 374 / 2e-130 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013823 [exp] 364 / 6e-128 AT2G36870 301 / 7e-104 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 344 / 1e-118 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10037377 [exp] 341 / 1e-117 AT2G36870 422 / 9e-150 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 338 / 3e-116 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10021422 [exp] 337 / 4e-116 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122900 [exp] 376 / 1e-131 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.016G098600 [exp] 365 / 4e-127 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G006600 [exp] 334 / 4e-115 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.001G136100 [exp] 210 / 1e-65 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G097300 [exp] 208 / 5e-65 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.014G115000 [exp] 190 / 2e-58 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.009G163850 [exp] 189 / 2e-58 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.010G102300 [exp] 188 / 2e-57 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.008G138400 [exp] 186 / 1e-56 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.011G077320 [exp] 177 / 2e-53 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10026536 pacid=23164289 polypeptide=Lus10026536 locus=Lus10026536.g ID=Lus10026536.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTTGATGTTTTTCCTCGTAACACTTTCAATCCACTCAACAGCAAATTCCATCGCCAGCAAATACAATAAAAACCACCTAAAACTAG AGCCACCGCATCCAGGCTACCGGCCGAGCACCAAGTTCAAGCCAACAACCTTTCATAACTGTTACAGAAACCTTTGGGGCCAGACCCATCAAAGGCTCAG CCCGTACGGTCTAACCATGTGGCTCGATCGGATGTCAGGGAGCGGGTTCAAATCGTCCAAGTCGTATCGGTCTGGCTACTTTGGCGCTTCCATCAAGCTT CAAGCTGGCTACACCGCCGGTGTCAACACGGCATTCTATCTGTCGAATAATGAGGCTCATCCAGGGAATCATGATGAGGTGGACATTGAATTTCTGGGGA GGACACTGAAGGAGCCTTATACAGTGCAGACAAATGTGTACGTAAGAGGAAGTGGGGATGGAGGTGACATCATTGGGAGAGAAGCAAGGTTTCATTTGTG GTTCGATCCCACCAAACACTTCCACCATTATGCCATTCTTTGGAATCCTAAAGAGATCATATTTTTAGTGGATGACATTCCAATAAGAAGGTACCAAAAG AAAAGCGATGCAACATTCCCAACAAGATCAATGTGGGCTTACGGCTCGATATGGGATGCCTCGAATTGGGCCACGGACGACGGCAAATATAGAGCCGATT ACAAATACCAACCTTTTGTTTCAAAGTACAGGACATTCGTGACATCCGGCTGCCCCAACGATGCTCCGCCGAGTTGCCCATCAGTATCGGCATCGCCTTA TCGCTCCGGCGGGCTGACGGAACGGCAGATTACGGCAATGAGATGGGTGCAGAAACACCGAATGGTGTATCACTATTGCATGGACACAGCAAGGGACCAT TCCCTCACCCCAGAGTGCAAGAAATTTGCGACAAAGATGCGTAAAAATAGTCCACCGATTGGATAG
AA sequence Show only first row Show all	>Lus10026536 pacid=23164289 polypeptide=Lus10026536 locus=Lus10026536.g ID=Lus10026536.BGIv1.0 annot-version=v1.0 MASSSLMFFLVTLSIHSTANSIASKYNKNHLKLEPPHPGYRPSTKFKPTTFHNCYRNLWGQTHQRLSPYGLTMWLDRMSGSGFKSSKSYRSGYFGASIKL QAGYTAGVNTAFYLSNNEAHPGNHDEVDIEFLGRTLKEPYTVQTNVYVRGSGDGGDIIGREARFHLWFDPTKHFHHYAILWNPKEIIFLVDDIPIRRYQK KSDATFPTRSMWAYGSIWDASNWATDDGKYRADYKYQPFVSKYRTFVTSGCPNDAPPSCPSVSASPYRSGGLTERQITAMRWVQKHRMVYHYCMDTARDH SLTPECKKFATKMRKNSPPIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10026536 [exp]	0	1
					Lus10025316 [exp]	4.5	0.9660
					Lus10034849 [exp]	4.5	0.9469
AT5G53820			Late embryogenesis abundant pr...		Lus10003056 [exp]	4.7	0.9177
					Lus10000325 [exp]	6.3	0.9660
					Lus10002099 [exp]	7.7	0.9660
AT2G30880			Pleckstrin homology (PH) domai...		Lus10027607 [exp]	8.8	0.6541
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10004735 [exp]	8.9	0.9660
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	10.0	0.9660
					Lus10011594 [exp]	11.0	0.9660
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	11.8	0.9660

Compare expression of checked genes

Lus10026536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.