Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56570 466 / 2e-160 SET domain-containing protein (.1) AT3G55080 56 / 5e-08 SET domain-containing protein (.1.2) AT1G14030 55 / 7e-08 Rubisco methyltransferase family protein (.1) AT3G07670 55 / 7e-08 Rubisco methyltransferase family protein (.1) AT5G17240 47 / 2e-05 SDG40 SET domain group 40 (.1) AT5G14260 44 / 0.0003 Rubisco methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013825 [exp] 638 / 0 AT3G56570 439 / 9e-152 SET domain-containing protein (.1) Lus10029539 [exp] 64 / 7e-12 AT3G56570 45 / 7e-06 SET domain-containing protein (.1) Lus10012309 [exp] 58 / 9e-09 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10035757 [exp] 56 / 4e-08 AT5G17240 485 / 1e-168 SET domain group 40 (.1) Lus10036780 [exp] 54 / 3e-07 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 52 / 6e-07 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G135700 [exp] 540 / 0 AT3G56570 446 / 9e-153 SET domain-containing protein (.1) Potri.004G081400 [exp] 68 / 8e-12 AT5G17240 543 / 0.0 SET domain group 40 (.1) Potri.008G090500 [exp] 57 / 2e-08 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.014G169300 [exp] 52 / 5e-07 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10026538 pacid=23164300 polypeptide=Lus10026538 locus=Lus10026538.g ID=Lus10026538.BGIv1.0 annot-version=v1.0 ATGAGCCGGCGATTGAGGGCTTTTGTGCGATGGATGAAGTCACAGGGGTTCCAGTGGAGCGACGCAATGGAGTTCGTTGGGAGTTCAGAAGACGAAGGAG GAGTGTCGGTGAAGGCAGTGAGTGATTTGAAGGAAGGGGAGGTGGTGGCCACGATTCCGAAGGCTGCGTGCCTTACCGTCAAGAACAGCGAAGCTTGCGA ATTGATTGAATCAGCTGGTTTGGGCGGGTGTTTAGGACTTTCTGTGGCTCTCATGTATGAGAGGAGCTTAGGGCAGTCATCTCCCTGGGCTGGGTATCTT CAGCTGTTGCCGGAGAGCGAGAGCGTCCCTTTGCTTTGGACTATCGATGAGATTGATCGATTCCTCCAGGGCACCGAGCTTCACAAGTTGGCAGTGGCAT TTGTCAACCGGCAGGCAGTTAAAGAAGACAAAGGTCTTGTTTATGAGGACTGGGAAGAGAACATTTTGCCCCTAGTTGATCAACTTCCTTCCAGTGTTGA CGCAAAATTTTTCGGGGTTGATCAGTATTTTGCCGTGAAGAGTCTTGTCTCGTCAAGAGCTTTTGAGATAGATGATTACCATGGACATGGAATGGTGCCT TTGGCTGATTTATTTAATCATAAGACTGGAGCTGAGGATGTGCACTTCACACATTCTGAATATGATGATGACGGTGATGATAACAACACCAGCGATTTAT CCGATGAAGATGCTGGTGATGAGGAGCCATCAAGTGATCTAGAATATGTGGAAGAGGAGCCATCAAGTGATCTTGAATCCCCTTCAATCAATGGGGACCA TCCAACGGTGTTGGAGATGATCATGGTGAAAGATGTAAAACGTGGAGCTGAGATTTTCAACACATATGGGTTGGTGGGTAATGCTGCTTTGCTGCACAGA TACGGATTTACAGAGCCAGACAATGCATTTGACATTGTCAATATTGATATGGATTTGGTACTCCAATGGAGCTCATCATTGTTCACCGGCCGGTATAGTA GAGCAAGACTATCTCTGTGGAGAAGTTTAGGATACTCGGGCTGTGTTAGCGGGGAGACAGAATACTTTGAAATCTCGAATGATGGTGAACCACAGATTGA GTTATTGATCCTGTTATACATAATATTATTACCGGAGGAAACTTACCTTAAACTGGATCTCCTAGTTTCAACCACAACTAAGAAAGAAGAATCGGTAAGC ATGTTCTTGTCAGCAGAATGCAATATCACAAAGGACAAAAGTTCAGAGATCAGTCGCGATCTGCTATTGATGGAAAGCGTCTGTGATGCTCTACTGTGGC ACGCTGATAAGAGGGATAGTTTATATGGTTCGAAGTTGATGAAAGACGATGTTGAGGCTCTTCAAAGATGTAATGCCAAAGAAGGAAAGGTCTACTATTC TCTTATGTTGCGTGTATGTGAGCGGAGGATTATAGAGAAACTCAGATCGTATGCTATTGATGCTAAGTCTTCGAAGGAAATGAGGAGAGCATCCGGTAGA AAGAGGTTGAAGAAAGAAAGCAGTGCCAGTGAAGGTACGCAAGGAAACCATCTTTGA
AA sequence Show only first row Show all	>Lus10026538 pacid=23164300 polypeptide=Lus10026538 locus=Lus10026538.g ID=Lus10026538.BGIv1.0 annot-version=v1.0 MSRRLRAFVRWMKSQGFQWSDAMEFVGSSEDEGGVSVKAVSDLKEGEVVATIPKAACLTVKNSEACELIESAGLGGCLGLSVALMYERSLGQSSPWAGYL QLLPESESVPLLWTIDEIDRFLQGTELHKLAVAFVNRQAVKEDKGLVYEDWEENILPLVDQLPSSVDAKFFGVDQYFAVKSLVSSRAFEIDDYHGHGMVP LADLFNHKTGAEDVHFTHSEYDDDGDDNNTSDLSDEDAGDEEPSSDLEYVEEEPSSDLESPSINGDHPTVLEMIMVKDVKRGAEIFNTYGLVGNAALLHR YGFTEPDNAFDIVNIDMDLVLQWSSSLFTGRYSRARLSLWRSLGYSGCVSGETEYFEISNDGEPQIELLILLYIILLPEETYLKLDLLVSTTTKKEESVS MFLSAECNITKDKSSEISRDLLLMESVCDALLWHADKRDSLYGSKLMKDDVEALQRCNAKEGKVYYSLMLRVCERRIIEKLRSYAIDAKSSKEMRRASGR KRLKKESSASEGTQGNHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	0	1
AT1G75980			Single hybrid motif superfamil...		Lus10005613 [exp]	1.7	0.7188
AT1G57720			Translation elongation factor ...		Lus10033213 [exp]	2.6	0.7491
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10026003 [exp]	4.6	0.7073
AT1G18070			Translation elongation factor ...		Lus10018000 [exp]	6.5	0.7128
AT5G56940			Ribosomal protein S16 family p...		Lus10014281 [exp]	8.4	0.7142
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10004414 [exp]	8.5	0.7177
AT4G25740			RNA binding Plectin/S10 domain...		Lus10014966 [exp]	10.8	0.6946
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10034239 [exp]	13.2	0.7253
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10003653 [exp]	13.3	0.6897
AT4G36420			Ribosomal protein L12 family p...		Lus10028336 [exp]	16.0	0.7034

Compare expression of checked genes

Lus10026538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.