Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03430 662 / 0 phosphoadenosine phosphosulfate (PAPS) reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013826 [exp] 864 / 0 AT5G03430 709 / 0.0 phosphoadenosine phosphosulfate (PAPS) reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123000 [exp] 713 / 0 AT5G03430 795 / 0.0 phosphoadenosine phosphosulfate (PAPS) reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00994 [flax] [poplar] MoCF_biosynth Probable molybdopterin binding domain CL0039 [flax] [poplar] HUP PF01507 [flax] [poplar] PAPS_reduct Phosphoadenosine phosphosulfate reductase family
Representative CDS sequence Show only first row Show all	>Lus10026539 pacid=23164315 polypeptide=Lus10026539 locus=Lus10026539.g ID=Lus10026539.BGIv1.0 annot-version=v1.0 ATGCGTCGAAATTCCTTTCCGGTCTTTTTGGATGTTTCATTTGGTCAATCCGATGTGCCAGGGAAGATGGAGATCGATCAGGCAATAATAGGGAGTGACG ATAGGAGGCTCAAGACTAAGTATAACAATGCCATCTATGTTATTCAAAGAGCTCTTGCTTTGTACCCAATTGAAGAGGTCGCTCTAAGCTTCAATGGAGG GAAGGATTCAACTGTACTCCTCCATCTACTTAGAGCTGGCTACTTTTTGCATAAGGGTGAACAGAGCTGTTCAAATGGGGGTTTTACTAGCTTCCCACTT AGAACTATATATTTTGAAAGTCCTTCTGCTTTTCCAGAGATTAACTCTTTCACCTATGATGCGGCATCAAGATACGGTTTGCAACTGGATATCGTAAGCT TAGACTTCAAGACTGGGTTGGAAAATCTACTTAAGGCTAATCCCATTCGGGCTATTTTCCTTGGTGTTCGAATTGGTGATCCTACTGCGGTAGGACAAGA ACAGTTCTCTCCCAGTTCACCCGGATGGCCGCCTTTTATGCGAGTTAACCCTATATTGGATTGGTCTTACAGGGATGTTTGGGCATTTCTTTTGACATGC AAGGTCCAATATTGTAGTCTTTACGACCAAGGGTATTACTCCCTTATACTTGAGATGTTACACATCCTACTCAGGATTTCACACTTCTCTTATGGGTATA CATCAATTGGGAGCATCCACGATACAACACCGAACTCATTGCTTTCGATCAGTGACTCTTCCGGTAGTCAGGAAAAGTTTAAACCTGCATATTTGCTTTC TGATGGTAGATCAGAAAGAGCAGGGAGGGTAAAGAAGTTGTCTCCTCCGATATCCCAGGGTTCTCCAGTTCTTGGAGACAGCCCAGATGTTCCACATTCC CATATAAACAGAATGCGAATAGGATCAGCCATTTCTGTAGGAGATGAGATCCTCTCAGATCTGGCGCTGTTCAGGATGAATTGGGAGCTTTGCTTTGACA AAAGCTTCTCTTCATTCAATTGGTTGATTGATTCTGTTGCTGAAGAAGTGGAAAGGCAGAAATCTTCAAATGACCTGGTATTCATATATGGGGGCATAGG TCCTTTGCATTCTGATGTTACCTCAGCAGGTGTTGCCAAGGCTTTTGGGGTTCGCCTGGCCCCTGACGAAGAGTTCGAAGAATACCTGAGACATCTTATA GGCAAACACTGCACTGGTGACCGCAATGAGATGGCTCTGTTACCAGAAGGTATCACTGAATTATTGCATCATGAAAAGCTGGACGTACCTTTGATTAAGT GCCAGAATGTAATCCTGCTTACTGCTACCAATAAATCCGAGCTGGAGAAGGAATGGGAGTGTCTGGTTGACTTCACTAACTCTTGCGGCTTACTGACGGT GATGAAGCCAAATGTATCAAAGTGCTTAACAACCCATCTTTCAGATGTGGAGACAGCTCAACCATTGTCAAAACTTTGCATGCAGTACCCAGATCTCAGT ATTGTTTGCTATCGCAAGTCCAGAGCTGGGCCTCTCATAATCAGTTTTGAAGGCAAGGTAAGCAGGATTGATTCTGCCTTATTCCCCTTTCTCTTCTTCT TTGCTTCAGTTTTGTTGCCTGACGCTAAAATGGCTGACAGGAGCCAGCAAGGATTGAAGCAGCAGCAGAAGCATTGTGCAAGAAGTTCCCGGGGGGAGTT TTCTCCGAAAACTAACAGAGTCGGATTGCCGGGAGACCTTTTTTCAATGAAAGGTTGA
AA sequence Show only first row Show all	>Lus10026539 pacid=23164315 polypeptide=Lus10026539 locus=Lus10026539.g ID=Lus10026539.BGIv1.0 annot-version=v1.0 MRRNSFPVFLDVSFGQSDVPGKMEIDQAIIGSDDRRLKTKYNNAIYVIQRALALYPIEEVALSFNGGKDSTVLLHLLRAGYFLHKGEQSCSNGGFTSFPL RTIYFESPSAFPEINSFTYDAASRYGLQLDIVSLDFKTGLENLLKANPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRDVWAFLLTC KVQYCSLYDQGYYSLILEMLHILLRISHFSYGYTSIGSIHDTTPNSLLSISDSSGSQEKFKPAYLLSDGRSERAGRVKKLSPPISQGSPVLGDSPDVPHS HINRMRIGSAISVGDEILSDLALFRMNWELCFDKSFSSFNWLIDSVAEEVERQKSSNDLVFIYGGIGPLHSDVTSAGVAKAFGVRLAPDEEFEEYLRHLI GKHCTGDRNEMALLPEGITELLHHEKLDVPLIKCQNVILLTATNKSELEKEWECLVDFTNSCGLLTVMKPNVSKCLTTHLSDVETAQPLSKLCMQYPDLS IVCYRKSRAGPLIISFEGKVSRIDSALFPFLFFFASVLLPDAKMADRSQQGLKQQQKHCARSSRGEFSPKTNRVGLPGDLFSMKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03430			phosphoadenosine phosphosulfat...		Lus10026539 [exp]	0	1
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	2.0	0.8731
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	2.4	0.9079
AT1G22140			unknown protein		Lus10025627 [exp]	4.6	0.8720
AT3G19460			Reticulon family protein (.1.2...		Lus10019812 [exp]	6.6	0.8707
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038215 [exp]	7.3	0.8670
AT5G49540			Rab5-interacting family protei...		Lus10029365 [exp]	8.8	0.8614
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10014468 [exp]	8.9	0.8477
AT1G09150			pseudouridine synthase and arc...		Lus10015197 [exp]	11.8	0.8683
AT2G18465			Chaperone DnaJ-domain superfam...		Lus10020871 [exp]	13.4	0.7989
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	15.5	0.8604

Compare expression of checked genes

Lus10026539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.