Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53220 148 / 2e-46 Thioredoxin superfamily protein (.1) AT3G56420 49 / 9e-08 Thioredoxin superfamily protein (.1) AT1G45145 46 / 1e-06 LIV1, ATTRX5, ATH5 LOCUS OF INSENSITIVITY TO VICTORIN 1, thioredoxin H-type 5 (.1) AT1G53300 43 / 4e-05 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT2G40790 41 / 6e-05 ATCXXS2 C-terminal cysteine residue is changed to a serine 2 (.1) AT3G17880 42 / 8e-05 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT1G31020 41 / 8e-05 ATO2 thioredoxin O2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013827 [exp] 238 / 5e-82 AT3G53220 172 / 2e-56 Thioredoxin superfamily protein (.1) Lus10029009 [exp] 46 / 1e-06 AT3G08710 126 / 5e-38 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Lus10014277 [exp] 46 / 1e-06 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10041799 [exp] 45 / 2e-06 AT3G51030 182 / 8e-61 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Lus10029090 [exp] 45 / 3e-06 AT3G08710 114 / 2e-33 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Lus10042854 [exp] 40 / 0.0004 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123100 [exp] 166 / 2e-53 AT3G53220 192 / 2e-64 Thioredoxin superfamily protein (.1) Potri.016G138800 [exp] 63 / 7e-13 AT3G08710 208 / 1e-70 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.006G110100 [exp] 56 / 2e-10 AT3G08710 178 / 1e-58 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.019G062000 [exp] 51 / 2e-08 AT3G08710 164 / 6e-53 THIOREDOXIN TYPE H 9, thioredoxin H-type 9 (.1.2) Potri.005G232700 [exp] 49 / 4e-08 AT3G51030 162 / 5e-53 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) Potri.004G031700 [exp] 47 / 6e-07 AT1G11530 179 / 1e-59 C-terminal cysteine residue is changed to a serine 1 (.1) Potri.002G030000 [exp] 45 / 1e-06 AT3G51030 160 / 3e-52 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10026540 pacid=23164341 polypeptide=Lus10026540 locus=Lus10026540.g ID=Lus10026540.BGIv1.0 annot-version=v1.0 ATGGATGTGACGGAGGGAGATGGCAAGAAAGCTCCGGAAGGTATCGATATGGCAGCGAATCGCCACGGAAACTTGAGAAGAGCATCAACTGATGAAACCC ACCTCCAGATTCTATGCCACATCACTTCTTCCCGAGCTCCTGCCGTCGTCAACTACGGCGCATCATGGTACACCCTTTCTCCTCCTTTTTCGTCCTTACT TCTTTCCGCTTATTTTGGTTGCTGCAATGATGCACGTAAGGTGTTCTATCATATGCCTCTTAGGCAAAAGCTTTTGCAAAAAGATGGACTTTCGTGCAGC TCCTGTAACCGGATACTACCTGCATTTCTCCGGCTGAGCAACGACTTCCCAACGCTTTCCTTCGTCTATGCAGATATCGACGAGTGCCCTGAAACAACCC ACCACATTCGCTTCACCCCGTCTTTCCATTTTCACCGTGACGGGGAAAAGGTTGATGAGATGATCGGCGTCGGAGATGAGCGGCTCCATGACCGCTTGTG GTTGCATTCTGATTGA
AA sequence Show only first row Show all	>Lus10026540 pacid=23164341 polypeptide=Lus10026540 locus=Lus10026540.g ID=Lus10026540.BGIv1.0 annot-version=v1.0 MDVTEGDGKKAPEGIDMAANRHGNLRRASTDETHLQILCHITSSRAPAVVNYGASWYTLSPPFSSLLLSAYFGCCNDARKVFYHMPLRQKLLQKDGLSCS SCNRILPAFLRLSNDFPTLSFVYADIDECPETTHHIRFTPSFHFHRDGEKVDEMIGVGDERLHDRLWLHSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53220			Thioredoxin superfamily protei...		Lus10026540 [exp]	0	1
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Lus10008505 [exp]	2.0	0.8548
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	3.5	0.8382
AT3G55640			Mitochondrial substrate carrie...		Lus10004689 [exp]	4.9	0.8115
AT1G60400			F-box/RNI-like superfamily pro...		Lus10023039 [exp]	5.0	0.8040
					Lus10040955 [exp]	7.4	0.7548
					Lus10000657 [exp]	16.7	0.7232
AT1G01770			unknown protein		Lus10036349 [exp]	17.4	0.7762
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10010463 [exp]	21.1	0.7526
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10022656 [exp]	21.4	0.7010
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10041646 [exp]	23.0	0.8071

Compare expression of checked genes

Lus10026540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.