Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36880 474 / 3e-169 MAT3 methionine adenosyltransferase 3 (.1.2) AT4G01850 470 / 1e-167 AtSAM2, SAM-2, MAT2 S-adenosylmethionine synthetase 2 (.1.2) AT3G17390 470 / 2e-167 MAT4, SAMS3, MTO3 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) AT1G02500 469 / 3e-167 METK1, AtSAM1, SAM-1, MAT1, SAM1 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013828 [exp] 507 / 0 AT2G36880 725 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10001395 [exp] 494 / 8e-177 AT2G36880 723 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10023007 [exp] 491 / 6e-176 AT2G36880 728 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10004522 [exp] 475 / 2e-169 AT3G17390 739 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10009985 [exp] 472 / 3e-168 AT3G17390 735 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10010070 [exp] 471 / 5e-168 AT4G01850 739 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Lus10038044 [exp] 468 / 8e-167 AT3G17390 736 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123200 [exp] 482 / 4e-172 AT2G36880 716 / 0.0 methionine adenosyltransferase 3 (.1.2) Potri.008G099300 [exp] 473 / 2e-168 AT3G17390 733 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.010G153500 [exp] 468 / 8e-167 AT1G02500 730 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2) Potri.014G114700 [exp] 467 / 2e-166 AT4G01850 744 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Potri.013G004100 [exp] 467 / 3e-166 AT3G17390 737 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.002G189200 [exp] 466 / 9e-166 AT4G01850 741 / 0.0 S-adenosylmethionine synthetase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02772 [flax] [poplar] S-AdoMet_synt_M S-adenosylmethionine synthetase, central domain PF02773 [flax] [poplar] S-AdoMet_synt_C S-adenosylmethionine synthetase, C-terminal domain PF00438 [flax] [poplar] S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10026541 pacid=23164207 polypeptide=Lus10026541 locus=Lus10026541.g ID=Lus10026541.BGIv1.0 annot-version=v1.0 ATGGAAACTTTCCTATTCACCTCCGAGTCCGTGAACGAAGGTCATCCAGACAAGCTGTGCGACCAGGTATCCGATGCCATCCTCGACGCCTGCCTAGAGC AGGATCCGGAGAGCAAGGTGGCTTGCGAGACCTGCACCAAGACCAACATGGTCATGGTCTTCGGCGAGATCACCACCAAGGCTAAGGTCAACTACGAGAA GATCGTGAGGGACACTTGCAGGGGAATCGGATTCACATCCCCCGATGTGGGTCTCGATGCTGACAACTGCAAGGTTCTCGTCAACATTGAGCAGCAGAGT CCCGACATCGCTCAGGGCGTCCATGGCCATCTCTCCAAGAAGCCTGAGGAGATCGGAGCTGGCGATCAGGGCCATATGTTTGGCTATGCCACCGATGAGA CACCCGAGTTGATGCCTCTCACCCATGTCCTCGCCACCAAGCTGGGAGCCAAGCTCACCGAGGTGAGAAAGAACAAGACTTGCGCATGGTTGAGGCCTGA TGGGAAAACCCAGGTCACCGTTGAGTACAAGAACGACAATGGAGCCATGGTTCCGGTGAGAGTCCACACTGTTCTGATCTCAACTCAGCATGATGAGACC GTCACTAATGACCAGATCGCAAAGGACTTGAAAGAGCATGTGATCAAGCCGGTGATCCCAGCTCAGTATCTTGATGACAAGACCATCTTCCACCTCAACC CATCGGGTCGTTTCGTGATCGGAGGACCCCAAGGTTTCCTAAGCCAGTGGCCTGGAATGATCTCGATTAACCTCGATTTGGTGAGAGGAGGCAACTTCAG GTACCAGAAGACTGCTGCATATGGGCATTTTGGTCGTGAGGATCCTGATTTCACTTGGGAGACTGTCAAGCAACTCAAGCCCAAAGCTTAA
AA sequence Show only first row Show all	>Lus10026541 pacid=23164207 polypeptide=Lus10026541 locus=Lus10026541.g ID=Lus10026541.BGIv1.0 annot-version=v1.0 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVNYEKIVRDTCRGIGFTSPDVGLDADNCKVLVNIEQQS PDIAQGVHGHLSKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCAWLRPDGKTQVTVEYKNDNGAMVPVRVHTVLISTQHDET VTNDQIAKDLKEHVIKPVIPAQYLDDKTIFHLNPSGRFVIGGPQGFLSQWPGMISINLDLVRGGNFRYQKTAAYGHFGREDPDFTWETVKQLKPKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10026541 [exp]	0	1
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10013828 [exp]	1.0	0.9932
AT2G04850			Auxin-responsive family protei...		Lus10001736 [exp]	3.2	0.9832
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	3.5	0.9803
AT5G61340			unknown protein		Lus10034727 [exp]	3.9	0.9817
AT5G37478			TPX2 (targeting protein for Xk...		Lus10020800 [exp]	5.9	0.9772
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	6.7	0.9785
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10036433 [exp]	7.3	0.9783
AT5G61340			unknown protein		Lus10021641 [exp]	8.0	0.9770
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10027888 [exp]	9.5	0.9753
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10042658 [exp]	9.8	0.9690

Compare expression of checked genes

Lus10026541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.