Plant FIBer expression Database

Lus10026542 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36885 218 / 8e-71 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013829
[exp]
285 / 1e-96 AT2G36885 304 / 2e-104 unknown protein
Lus10010768
[exp]
63 / 3e-12 ND 96 / 5e-25
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G098900
[exp]
227 / 4e-74 AT2G36885 256 / 7e-86 unknown protein
PFAM info
Representative CDS sequence
>Lus10026542 pacid=23164294 polypeptide=Lus10026542 locus=Lus10026542.g ID=Lus10026542.BGIv1.0 annot-version=v1.0
ATGGCTTCTCTAACTGCTGGGCTGAGCCATTCTCTCAACCATTCCTCTACTCTGTATCGGAACTACCACTATCAGAAGCATCCCTCTTCTCCTTCTTCTT
CTTCTTCATTCTCCACCACTCCTCCTCTCTTCTTCACTATCCCATCTCCCTCATTTCAATATACCTCTTCCGTCAATAGAGCCCGACCCTTTTCCTGTTT
CCCACCGAACAACAACAGCTACTCCACTGATGATGACGAGGAAAAGGAAGTAGAAGTAGAAGAACAAGGAGTGGAAGAGACATTGCTCTACTCTGTATCT
CCCCTGCCTCTCCTCGTCCTAGCTGCTCTCCCTGGAGGTGGGGCAATTAGGTCAGTGTTTGGGCCATTCGTGGAGATTGTCAAGTCCTTAAACCTCCCTG
GCTGGCTAGTCCATTGGGGTCACCCTGGCAATATGGCGGTGGTGCTGTTTGCAATGGGTGGATACGGAACATACCTGGGATTCCGAATTCGATACTCTGA
TGATGTGGAGGAGAAGGCCAAAGCCAAAGACTTGCATCCAAAGCTGCTAGCGGGCATGTTCTTCTTCTTCGCTCTTGGTGCCACCGGCGGAGTTACTTCT
CTGCTCACTTCTGACAGACCCATCTTGGAGAGTCCCCATGCTGTGACAGGATTCATAGGGCTTGGTCTCTTGACACTGCAGACCATTCTGCCATCACTCT
TTGAGGGAAATCCAGGGCTGAGGAATGTACATGGGATATTGGGGAGTGGGATAATGACACTTTTCCTCATCCACGCAGCTCTTGGGCTCCAGCTTGGTCT
CAGCTACTGA
AA sequence
>Lus10026542 pacid=23164294 polypeptide=Lus10026542 locus=Lus10026542.g ID=Lus10026542.BGIv1.0 annot-version=v1.0
MASLTAGLSHSLNHSSTLYRNYHYQKHPSSPSSSSSFSTTPPLFFTIPSPSFQYTSSVNRARPFSCFPPNNNSYSTDDDEEKEVEVEEQGVEETLLYSVS
PLPLLVLAALPGGGAIRSVFGPFVEIVKSLNLPGWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDDVEEKAKAKDLHPKLLAGMFFFFALGATGGVTS
LLTSDRPILESPHAVTGFIGLGLLTLQTILPSLFEGNPGLRNVHGILGSGIMTLFLIHAALGLQLGLSY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G36885 unknown protein Lus10026542
[exp]
0 1
AT5G12860 DIT1 dicarboxylate transporter 1 (.... Lus10027368
[exp]
2.4 0.8337
AT2G36885 unknown protein Lus10013829
[exp]
6.3 0.8276
AT4G01070 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYL... Lus10003900
[exp]
9.9 0.8045
AT5G41460 Protein of unknown function (D... Lus10017514
[exp]
10.7 0.8337
Lus10036558
[exp]
11.8 0.7818
AT3G21200 PGR7 proton gradient regulation 7 (... Lus10035751
[exp]
13.2 0.8193
AT4G02990 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitoch... Lus10014877
[exp]
18.3 0.8293
AT1G78270 ATUGT85A4 UDP-glucosyl transferase 85A4 ... Lus10036969
[exp]
21.2 0.7734
AT4G23490 Protein of unknown function (D... Lus10028769
[exp]
21.5 0.8064
Lus10025222
[exp]
25.2 0.6805

Lus10026542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.