Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05160 622 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 420 / 1e-141 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 419 / 3e-141 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT5G38120 400 / 5e-134 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 391 / 2e-130 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 387 / 9e-129 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 382 / 1e-126 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 380 / 8e-126 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21240 372 / 6e-123 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 345 / 2e-112 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013831 [exp] 1037 / 0 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 619 / 0 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 614 / 0 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 424 / 6e-143 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 427 / 2e-141 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 393 / 1e-130 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10036994 [exp] 389 / 1e-129 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 388 / 8e-129 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 384 / 3e-127 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112800 [exp] 626 / 0 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 618 / 0 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 447 / 3e-152 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 434 / 4e-147 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 413 / 9e-139 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 405 / 2e-135 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.017G033600 [exp] 391 / 3e-130 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.003G099700 [exp] 382 / 9e-127 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G169700 [exp] 369 / 7e-122 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.012G094800 [exp] 368 / 2e-121 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10026544 pacid=23164267 polypeptide=Lus10026544 locus=Lus10026544.g ID=Lus10026544.BGIv1.0 annot-version=v1.0 ATGGCGAATCTATCATTTTACGACTCTAAAACTCATATCTACTCATCTCCAAGACCGCCGGTCCATCACCCGACTGAACCCAGCCTTTCCTTGACCTCCT TCCTCTTCCGCTCCACTCTCTCCTCCCCTGATGCCACCGCCATAGTAGACGCCAACTCCGGCGAGAAATTGACTTTCCGACAGCTCAGAATCCAGGTCAA CAAGCTCGCCCAAGCTCTGCACAGTCTTGGTGTCACTAAGAACGACGTCGTCCTGATATTTGCTCCAAATTCCATCCGCTTCCCGATTTGCTTCCTCGCG ATCGTCTCCATCGGCGCCGTCGCATCCACCTGCAATCCTGCCTATACCGTCGGCGAACTCTCCAGGCAAGTCAAAGATTGCAACCCGAAGTTCATCGTCA CTGAGCCACAACTCGTCCATAAGGCCGCCGATTGCAATCTTCCCTTAATTCTATTGCAATCCGACGGACTCGTTAAGGATTTTTCAAAAGCCAAAATCTG GCGACTCTCCGAATTGATAGATTCGGCATCGGATTCCGATACGGATTCTCCGTTCGACGTGAGGCAGAGCGACGCAGCGGCACTGTGCTACTCGTCGGGG ACAACAGGGAGGAGCAAGGGAGTGGTGCTGACTCACGGGAACTTCATCGCGACGTCAGCGATGACAAACTCCGATCAGGAGAGATACAAGGAGCCGAAGA ACGTGTTCCTGTGCTTCTTGCCGATGTTCCACATATTCGGATTCGCAGTCATAACGTACGCACAGCTCCAGAGAGGGAACACGGTGGTGTCGATGGAGAA GTTCGAGCTCGGCAAAATGCTGCGGTGCGTGGAGAGGTACGGCGTCACGCACTTGACCGTGGTGCCACCTGTCATGATCGCTCTGGCGAAGCAGGGCAGC GAAGAGGTGAAGAAGTTCGATACATCGTCGTTGAGGGCGATTTTATCCGGCGCGGCGCCGTTGGGGAAAGACGTGATGGAAGAGTGCGCCAAAATTCTGC CCGGCGTTTCCATCACTCAGGGTTATGGCATGACGGAAACTTGTGGAGTTATTGCAATGGAGGATCGGGAAGGAGGTGGGCTGTCCGGTTCGACCGGGTG GCTATTTCCGGGGGTGGAATCGAGGATTTTGAGCGTAGAGACAATGAAGAAGCCTCTTCCGCCGAATCAAGTTGGCGAGATTTGCGTTCGAGGACCGAAT ATGATGCGCGGTTATCATAATGATGCCGAAGCAACGAAACAAACAATAGACGAGGAAGGATGGGTGCATACGGGTGATCTCGGGTATTTCGATGCAAAAG GACGGTTATTCGTGGTGGACAGAATCAAAGAGTTGATAAAATGTTACGGCTTTCAGGGGGCACCAGCAGAACTGGAAGGGCTTCTGCTTTCTCATCCTGA TATATTAGACGCCGTTGTCATTCCGTACCCGGACACCAAAGCCGGCGAGGTTCCCATTGCATATGTTGTTCGTGAGGCTACCAGCTCCCTAGATGAAGAA GCTGTGCTCAAATTCATCGCTCCGCAGGTTGCGCCATTCAAGAGACTGAGGAGGGTGACATTTGTGAGCAGCGTCCCCAAATCAGCTTCCGGGAAGATCC TGAGGAGGGAACTCATTGCTAAAGCTCATTCAAAGTTGTAG
AA sequence Show only first row Show all	>Lus10026544 pacid=23164267 polypeptide=Lus10026544 locus=Lus10026544.g ID=Lus10026544.BGIv1.0 annot-version=v1.0 MANLSFYDSKTHIYSSPRPPVHHPTEPSLSLTSFLFRSTLSSPDATAIVDANSGEKLTFRQLRIQVNKLAQALHSLGVTKNDVVLIFAPNSIRFPICFLA IVSIGAVASTCNPAYTVGELSRQVKDCNPKFIVTEPQLVHKAADCNLPLILLQSDGLVKDFSKAKIWRLSELIDSASDSDTDSPFDVRQSDAAALCYSSG TTGRSKGVVLTHGNFIATSAMTNSDQERYKEPKNVFLCFLPMFHIFGFAVITYAQLQRGNTVVSMEKFELGKMLRCVERYGVTHLTVVPPVMIALAKQGS EEVKKFDTSSLRAILSGAAPLGKDVMEECAKILPGVSITQGYGMTETCGVIAMEDREGGGLSGSTGWLFPGVESRILSVETMKKPLPPNQVGEICVRGPN MMRGYHNDAEATKQTIDEEGWVHTGDLGYFDAKGRLFVVDRIKELIKCYGFQGAPAELEGLLLSHPDILDAVVIPYPDTKAGEVPIAYVVREATSSLDEE AVLKFIAPQVAPFKRLRRVTFVSSVPKSASGKILRRELIAKAHSKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05160			AMP-dependent synthetase and l...		Lus10026544 [exp]	0	1
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	6.3	0.8659
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	7.3	0.8805
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	9.2	0.8628
AT4G12010			Disease resistance protein (TI...		Lus10028060 [exp]	10.1	0.8730
AT2G30210		LAC3	laccase 3 (.1)		Lus10026401 [exp]	14.5	0.8655
AT4G35160			O-methyltransferase family pro...		Lus10018628 [exp]	16.9	0.7980
					Lus10002087 [exp]	18.9	0.8662
					Lus10003852 [exp]	26.0	0.8522
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	30.2	0.8619
AT2G45220			Plant invertase/pectin methyle...		Lus10027206 [exp]	31.6	0.7826

Compare expression of checked genes

Lus10026544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.