Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17140 1003 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 273 / 4e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 271 / 1e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 270 / 2e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 267 / 6e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 266 / 9e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12100 265 / 1e-75 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G74580 263 / 3e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 265 / 6e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 258 / 6e-75 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013832 [exp] 1685 / 0 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 270 / 5e-77 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 266 / 4e-75 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 263 / 5e-75 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10043417 [exp] 265 / 8e-75 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 261 / 3e-74 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10021989 [exp] 266 / 1e-73 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 260 / 2e-72 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 252 / 4e-71 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G205600 [exp] 1189 / 0 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 301 / 9e-90 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 293 / 1e-86 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G149800 [exp] 280 / 1e-82 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G105400 [exp] 276 / 3e-78 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050300 [exp] 265 / 2e-77 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 264 / 5e-77 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 261 / 3e-76 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 260 / 1e-75 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G234500 [exp] 264 / 2e-75 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10026545 pacid=23164290 polypeptide=Lus10026545 locus=Lus10026545.g ID=Lus10026545.BGIv1.0 annot-version=v1.0 ATGTCCGGAAGGCCCATCTACTTTGTATACCATCATTTCAGCCCACTCCACCCGCTCTTGATCCTTTCCCAATTTTACTTTTCGTTACGTTCACTTTGCC AGTTTGCCGGAAGAACAGGAGGTGGGAAAACACTGAAAGTTCGACACCGGGAATCAATGGAGCCAACAGCCAAGCTCACCAGAGCACTCCTCGTCAATGC CTCCAACCCAAAGCTAGCATGGCATCTTTTTAAGCGCATTCTTACTCTACCTTCCCTTGACCATTTCCCCCATTCCGTTGAAACCATTACTCGAATCCTA GTCCGCGCCAAACTCCTTAACGAACTTGATGAGCTTCACGTACGCCTGCATTCTAACCTGCCTGCGCACATCTTACATCCTTGTCTTACTTCTGCGATTA CAGTCTCCGCTCAATTGGGCCAATTCGGTAAGGCCCTTTCTCATTTCAAAGCAATGCGTTTCCGGTTCCCAGATGAGCCGCCTTCCGTACGTCTGTATAA TTGTCTGATTAGGTCTTGCATCAAAGACGGGAGCGTCGAGCACGTTGGTTGGCTGTATAATGATATGATTGTAGCTGGGGTTTCTCCGGAGACTTTTACT TTCAATATTTTGATTGGTTTCCTTTGCAATTGTGGTCGTTTGGAAGAAGCCCGGGAGCTGTTTGATAAAATGTCTGAGAAGGGATGTGAGCCCAACGAGT TCACTTATGGGATTTTGGTTCGCGGGTATTGCAGAGCTGGGGACTCTACACGAGGATTGGAGCTTATGAGTGAAATGAAGAGTAGAGGATCACGTCCTAA CAACGTTGTGTATAATACTCTCATTTCTACATTCTGCAAGCAAGGTAAGAATGATGATGCCGAAAAATTGGTAGAAAGAATGAAAGAGGAAGGACTGCAT CCTGATGTTGTGACTTTCAATTCTAGGATCTCAGCACTTTGCGACGCTGGGAAAACTCTGGATGCTTGTAGGATTTTTAGAGATATGCAAAATGATCAAC ACTTGGGGCTGCCGAGGCCCAATATCGTCACGTATAATTTGATGCTTAAGGGTTTCTTTAAGGAAGGACAGGTGGAGGATGCTAAGTCTCTGTTTGAGAT TATGAAGAACAATCGTGTGTTGGTGAATATAGAGAGTTATAATATTTGGTTGGCAGGTATGTTCAGGAACAGGAAGAATTTTGAGGCTCACCTAGTTTTT AAAGAAATGATAGATATGAGAATCAAACCCAACTTATGTTCTTGTAACATAATGATAGATGGCCTATGCAAAAATGGAATGTTCTCTGATGCGAGAACGT TGATGAAAGAAATGATAGTCAATCAGATTTTTCCAGATGCAGTAACTTATAGTACTTTACTTCATGGTTATTGCAGTCGAGGAATGGTCTTGCAAGCTAA CAGTGTTTTGCATGAGATGATGCAGAATGGTTGTAATCCAACGACTTACACGTGCAATATCTTACTGCACAGTCTTTGGCAGGAGGATAAAATACCTGAA GCTGAGAAGCTGCTTCAGAAGATGCACGAGAGAGGCTATGGTGTGGATACTGTGACATGTAATATTATACTTGAAGGTCTTTGTAATCATGGGCAGCTGG ATAAGGCGATTGATGTTGTGAATGGTATGTGGACACATGGAAGTGCTGCCCTTGGTAACTTAGGGAATTCTTTCATTGGCCTCATAGATGATAAGAATAA TGCAAGAAAATGTGTGCCTGATTTGATCAGCTATTCAATTGTAATATCTGGATTATGCAAGGCTGGTAGAGTTGATGAGGCTAAGAAGAAGTTCCTTGAG ATGATGGGAAAACACTTGCAGCCTGATTCGGCCATTTATGATACTTTCATTCGTAGCTTCTGTAAAGAAGGGAAGTTATCTGCTGCATTTCGAGTGCTTA AAGACATGGAGAAAAGAGGTTGCAATAAAACCATACATACATTCAACTCCTTGATCCTGGGTCTAGGAAGAAAAAATCAACTATTTGAAATCCACGGTTT GATGGATGAGATGAAAGAAAGAGGGATTTCTCCAGATGTTTACACATATAACAATCTTCTCAGTTGTCTATGTGAAGGAGGGAGAACTAAGGATGCTCCA TCCGTTCTGGAGGAGATGCTGCAAAAGGGAATTTCTCCAAATGTTTCTTCTTTCAGAACATTACTTGCAGCTTTCTGCAAGGCTAGTGATTTCAATGCAG CACATGAGGTGTTTGAGATTGCTCTGGATGTGTGTGGCCACAAGGAAGCCCTTTATAGCTTAATGTTTAATGAGTTAGTTTCCGGTGGATTAGTTGCTGA AGCTAGACAGCTCTTCGAGACTGTGCTAGATAGGTCTTTTGACATGGCAAACTTCCTCTACAAAGATCTCATTGATAGACTTTGTAAGGATGACAAGTTG GAAGATGCCAGTTGTATACTACATAAGTTGATGGATAAAGGATATAAATTCGATCCAGCTGCATTCATGCCAGTAATTGAAGGCCTAGGCCGTGTGGGAA ACAAGGGTGAAGCTGAAGAACTTTCAGAGAGAATGATGGAGATGGTTTCGGAGGATAATGTGAAAAACAGGGCTGCTGCCTCTGGAACGAGAAATAAGAA TGGGGGGGCTGATTGGAAAACGATAATACAGAGGTATGTGGATAAAGAATTTATGAATGAAGTACATAGTATATTTGCTAGTAGCATCGTCTTCATATTT CCACAAATGAATTCCCTTTCTGGGAATCCATTTAAATTCAGAAGCATGAATGGGAGATCAAAGAAGCATCATCTGAAAGTGAAGACTTCACTTCTTGATC TGCCATCGAGAACACCTATACTGGATGACGGAAGTGGAGTTGCACTGAAAGCTCTTAAGCAGGTACAGAAGGGCTGGGGTCGGGGACGCCTTTTAGGTAA ACGGCCTCAGGAAGATGACTCTATCTAG
AA sequence Show only first row Show all	>Lus10026545 pacid=23164290 polypeptide=Lus10026545 locus=Lus10026545.g ID=Lus10026545.BGIv1.0 annot-version=v1.0 MSGRPIYFVYHHFSPLHPLLILSQFYFSLRSLCQFAGRTGGGKTLKVRHRESMEPTAKLTRALLVNASNPKLAWHLFKRILTLPSLDHFPHSVETITRIL VRAKLLNELDELHVRLHSNLPAHILHPCLTSAITVSAQLGQFGKALSHFKAMRFRFPDEPPSVRLYNCLIRSCIKDGSVEHVGWLYNDMIVAGVSPETFT FNILIGFLCNCGRLEEARELFDKMSEKGCEPNEFTYGILVRGYCRAGDSTRGLELMSEMKSRGSRPNNVVYNTLISTFCKQGKNDDAEKLVERMKEEGLH PDVVTFNSRISALCDAGKTLDACRIFRDMQNDQHLGLPRPNIVTYNLMLKGFFKEGQVEDAKSLFEIMKNNRVLVNIESYNIWLAGMFRNRKNFEAHLVF KEMIDMRIKPNLCSCNIMIDGLCKNGMFSDARTLMKEMIVNQIFPDAVTYSTLLHGYCSRGMVLQANSVLHEMMQNGCNPTTYTCNILLHSLWQEDKIPE AEKLLQKMHERGYGVDTVTCNIILEGLCNHGQLDKAIDVVNGMWTHGSAALGNLGNSFIGLIDDKNNARKCVPDLISYSIVISGLCKAGRVDEAKKKFLE MMGKHLQPDSAIYDTFIRSFCKEGKLSAAFRVLKDMEKRGCNKTIHTFNSLILGLGRKNQLFEIHGLMDEMKERGISPDVYTYNNLLSCLCEGGRTKDAP SVLEEMLQKGISPNVSSFRTLLAAFCKASDFNAAHEVFEIALDVCGHKEALYSLMFNELVSGGLVAEARQLFETVLDRSFDMANFLYKDLIDRLCKDDKL EDASCILHKLMDKGYKFDPAAFMPVIEGLGRVGNKGEAEELSERMMEMVSEDNVKNRAAASGTRNKNGGADWKTIIQRYVDKEFMNEVHSIFASSIVFIF PQMNSLSGNPFKFRSMNGRSKKHHLKVKTSLLDLPSRTPILDDGSGVALKALKQVQKGWGRGRLLGKRPQEDDSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	0	1
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10026402 [exp]	1.0	0.9545
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	1.4	0.9525
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	2.8	0.9460
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	6.6	0.9327
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	6.7	0.9461
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10004531 [exp]	7.1	0.9439
AT3G10650		AtNUP1	unknown protein		Lus10034137 [exp]	10.4	0.9409
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10008829 [exp]	13.6	0.9203
AT1G26170			ARM repeat superfamily protein...		Lus10031911 [exp]	13.8	0.9354
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003675 [exp]	14.7	0.9168

Compare expression of checked genes

Lus10026545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.