Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38270 858 / 0 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G61130 740 / 0 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 576 / 0 GAUT4 galacturonosyltransferase 4 (.1) AT2G17220 535 / 0 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT2G46480 531 / 5e-178 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT2G20810 447 / 1e-145 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT1G18580 442 / 6e-144 GAUT11 galacturonosyltransferase 11 (.1) AT4G35600 432 / 2e-141 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT3G25140 431 / 3e-139 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 426 / 4e-137 GAUT9 galacturonosyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013832 [exp] 1897 / 0 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009311 [exp] 729 / 0 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 715 / 0 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 713 / 0 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10023000 [exp] 636 / 0 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 632 / 0 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10038739 [exp] 583 / 0 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10024512 [exp] 462 / 8e-153 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10008015 [exp] 454 / 1e-149 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206000 [exp] 938 / 0 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.014G073800 [exp] 741 / 0 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G151400 [exp] 729 / 0 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.009G167400 [exp] 604 / 0 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 590 / 0 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.016G001700 [exp] 560 / 0 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 544 / 0 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.007G062700 [exp] 492 / 2e-164 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G100900 [exp] 476 / 2e-158 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.019G108900 [exp] 456 / 3e-149 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8 CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10026546 pacid=23164384 polypeptide=Lus10026546 locus=Lus10026546.g ID=Lus10026546.BGIv1.0 annot-version=v1.0 ATGGGGTTTTGCTGCTGGTCTTCTTCACCCACCTCTCCTACGCCTACCTCCACTGGTCGTCTCAGTTCAGGAGGCGTGTCTCATACACCTAGCAGCAGCA ATGCAACTTCATCAGGGAGGAGTGGCAATACTAATTCTTCAAAGGGAAGCAATGTCTCTGGGAACAGTCAGTTTTCTGCAGCTAGTGGCGACGACTCTTT TCCCAATGGGCAGCTCTTGCCCACCCCACATTTGAGGATCTTCTCTTTTGCCGAGCTTAAGCTGGCCACTAAGAATTTCAGGCCTGATACTGTGCTTGGA GAAGGAGGGTTTGGTAAAGTTTACAAAGGTTGGCTTGATGAGAGGAAGCCTGGGAAATCTGGAAGTGGAACTGTGGTTGCTGTCAAGAAACTTAATTCTG AGAGCTTGCAAGGATTGGAAGAATGGCAGTCAGAAATAAACTTCTTGGGAAGGCTTTCGCACCCCAACCTTGTCAGGCTGTTGGGATACTGCTTGGAAGA GGATGAGCTTCTCCTTGTGTATGAATTCATGCAGAAAGGAAGCTTGGAAAATCATCTATTTGGAAGAGGTGCAGCTGTTCAACCACTTCCATGGGACACT CGGTTGTCGATCGCCATAGGAGCCGCTCGAGGCCTTGCTTTCTTACATACACCGGACAAGAAAATTATCTATAGAGACTTCAAAGCCTCGAATATATTAC TAGATGGGTCTTACACATCCAAGATATCGGACTTCGGGTTGGCAAAGTTTGGTCCTTCGGCTAGTCAATCGCATGTGACTACTCGTGTCATGGGCACATA CGGTTATGCTGCTCCCGAGTATGTTTCCACAGGTCATCTATACGTGAAGAGCGACGTGTACGGGTTCGGAGTTGTACTCGTCGAGATCTTGACAGGGTTA AGGGCACTCGACACAAGTAGACCTAGCGGGAGGCATAGCCTAGCGGAATGGATCAAGCCTTATCTAAATGACAAAAGGAAGCTGAAAAGCATGATGGACA CTAACTTGGAAGGGAAGTATCCTTCAAAAGCAGCATTCAGAATAGCACAGCTAGCTCTAGTTTGTCTGGAATCAGAGCCGAAAAATCGACCCCACATGAG GGAAGTGGTGGAGACACTGGAAAGGATTGCATCGAACAACGAGAGGACACTAGAGCCCCGATCACACCGTTCGAGCAACCACCGGCCTGTCACTCCCCGG AATGGCCAGAGACCGTTGCAGCTCCGCTCTCCACTGCATCAACAGCAAGATGCTGGTCAAGTGATCGCTAGTAGAAGTATATCTGTGAGAAAGATGATTC ATTTATCATTTACCCCATTCAAGTTTCCACTGACCTGGGAGGTAGCTATCCTGCTCAGATTTGTTGCCATTCCGTTTATATTCGTATGGGAGCTGAAATC ACTCCGCTCCTTCTCTGATTGTCAAGCGTGTGACGACATTAAGGATATTGACATTATTGCTACGTACAGTGATCCTTCTGGCAATGTGCGAGTTAGTAGG GTTAAAATGAAAAACCTTTCTGCCTCGTGGGTGCTTGAGAACCCTGACGATGAGCATGATCAGGGTAACAGTAGTTCCAAGACATTGGAACATGTGAACT TTCCAAAAGATAAGCCTCGGAAGCAAGTGATTCGTCAGCGGTTTGGAGGAGGCAAAACTCAGTTCCCCCTGAAATCTGTAATGAGTCCAGCGAAGCTCAA GCGTCGGATTGCACGGCAAAAGAGGAAAGATCTCCGAATTGCTGAGCTAGTCCAACATGATAACGAAGCGGACAACCAGGCACGGTCAGCTGCAATAGAG CGGTCTAAAGCACTGGACACAACTATCACAGGGAAGTACAGCATATGGAGGAGAGATTTTGAAAATCCAAATTCCGATGCTATGTTGAAGCTCATGCGGG ACCAGATGATAATGGCCAAGGCATATGCAAATATTGCCAAATCTAACAATGAAACAGGTCTTTACAGTTCTCTGTTGAAGAACTCCAAAGACAGTCAGCT CGCCATTGGAGAAGCAACATCTGATGCTGAGCTTCATTCAAGTGCTCTTGATCGAGCAAAAGCTATGGGGCGTGTTCTCTCTATGGCCAAGGACCAACTT TATGATTGTCCTACAATGTCAAGGAAGTTAAGGGCTATGCTGCAGTCTAGTGAGGAGCATTTGAATGCTTTGAGGAAAAAAAGCGCCTTCTTGATTCAGC TGGCTGCTAAAACAGTTCCAAAGCCATTGCATTGTCTTCCTTTGCAGCTGGCTGCTGACTATTTCCTGCAGGGTCATCAGAACAAACAATATTTCAACAG TGGAAAGCTTGAAAATCCTAAACTTTACCACTACGCCATATTCTCCGACAATGTGCTAGCCACATCAGTGGTTGTCAATTCCACGGTGCTGCATGCAAAA GAACCTCAGAAACACGTTTTCCATGTCGTGACAGATAAGTTGAACTTCGCGGCAATGAAAATGTGGTTCATTGTGAACCCTCCAGCACGAGCGACAATCG AGGTGATGAACATAGATGATTTTAAGTGGTTGAATTCATCTTACTGTTCTGTCCTACGACAACTGGAATCTTCCAGGGTTAAGGAGTACTATTTCAAGGC CAACCACCCGTCATCTTTGTCAGCTGGATCTGACAATCTCAAGTACAGGAATCCAAAATACTTGTCTATGCTAAATCATCTTAGATTCTATCTTCCGGAA GTCTATCCAAAGCTGGACAAGATCCTGTTTCTGGACGATGACATTGTCGTGCAGAAAGATTTGGCACCACTTTGGTCAGTTGATCTACGAGGAATGGTCA ATGGCGCGGTGGAGACATGCAAGGAGAGCTTCCACAGGTTTGATAAGTATCTGAACTTCTCGAACCCGAAAATCAACGAGAATTTCCATCCAAATGCTTG TGGGTGGGCATTTGGGATGAACATGTTCGACTTGAAGGAGTGGAAGAAGCAGAATATCACTGGCATCTACCATTATTGGCAAGACCAGAATGAGGATAGA ACACTTTGGAAGTTGGGGACGTTGCCGCCTGGACTGATAACGTTCTATAACTTGACGTATCCGTTGGATCGAGGGTGGCATGTGTTGGGACTTGGATACG ATCCTGCGTTGAATCAAACGGAGATAGAGAATGGAGCAGTGGTGCATTACAATGGGAACTACAAGCCGTGGTTGGATTTGGCTATAGCCAAGTACAAGTC TTATTGGTCTAGATATATCAAGTTTGATAATCCTTACCTTCTTCAGTGCAACATCAGTGAATAA
AA sequence Show only first row Show all	>Lus10026546 pacid=23164384 polypeptide=Lus10026546 locus=Lus10026546.g ID=Lus10026546.BGIv1.0 annot-version=v1.0 MGFCCWSSSPTSPTPTSTGRLSSGGVSHTPSSSNATSSGRSGNTNSSKGSNVSGNSQFSAASGDDSFPNGQLLPTPHLRIFSFAELKLATKNFRPDTVLG EGGFGKVYKGWLDERKPGKSGSGTVVAVKKLNSESLQGLEEWQSEINFLGRLSHPNLVRLLGYCLEEDELLLVYEFMQKGSLENHLFGRGAAVQPLPWDT RLSIAIGAARGLAFLHTPDKKIIYRDFKASNILLDGSYTSKISDFGLAKFGPSASQSHVTTRVMGTYGYAAPEYVSTGHLYVKSDVYGFGVVLVEILTGL RALDTSRPSGRHSLAEWIKPYLNDKRKLKSMMDTNLEGKYPSKAAFRIAQLALVCLESEPKNRPHMREVVETLERIASNNERTLEPRSHRSSNHRPVTPR NGQRPLQLRSPLHQQQDAGQVIASRSISVRKMIHLSFTPFKFPLTWEVAILLRFVAIPFIFVWELKSLRSFSDCQACDDIKDIDIIATYSDPSGNVRVSR VKMKNLSASWVLENPDDEHDQGNSSSKTLEHVNFPKDKPRKQVIRQRFGGGKTQFPLKSVMSPAKLKRRIARQKRKDLRIAELVQHDNEADNQARSAAIE RSKALDTTITGKYSIWRRDFENPNSDAMLKLMRDQMIMAKAYANIAKSNNETGLYSSLLKNSKDSQLAIGEATSDAELHSSALDRAKAMGRVLSMAKDQL YDCPTMSRKLRAMLQSSEEHLNALRKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLQGHQNKQYFNSGKLENPKLYHYAIFSDNVLATSVVVNSTVLHAK EPQKHVFHVVTDKLNFAAMKMWFIVNPPARATIEVMNIDDFKWLNSSYCSVLRQLESSRVKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPE VYPKLDKILFLDDDIVVQKDLAPLWSVDLRGMVNGAVETCKESFHRFDKYLNFSNPKINENFHPNACGWAFGMNMFDLKEWKKQNITGIYHYWQDQNEDR TLWKLGTLPPGLITFYNLTYPLDRGWHVLGLGYDPALNQTEIENGAVVHYNGNYKPWLDLAIAKYKSYWSRYIKFDNPYLLQCNISE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38270		GAUT3	galacturonosyltransferase 3 (....		Lus10026546 [exp]	0	1
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10013832 [exp]	1.7	0.9487
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10035551 [exp]	2.0	0.9507
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	2.8	0.9507
					Lus10008302 [exp]	7.1	0.8952
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	8.5	0.9381
AT2G23810		TET8	tetraspanin8 (.1)		Lus10015494 [exp]	8.7	0.9361
AT2G23810		TET8	tetraspanin8 (.1)		Lus10019965 [exp]	9.5	0.9309
AT4G28400			Protein phosphatase 2C family ...		Lus10040565 [exp]	9.9	0.9230
AT4G34150			Calcium-dependent lipid-bindin...		Lus10027875 [exp]	11.7	0.9156
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	14.1	0.9095

Compare expression of checked genes

Lus10026546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.